Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entodinium_20caudatum_20[genbank_20GCA_5F002087855.1_202017-04-12] 37,535 sequences; 81,718,944 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq16413 111 4e-19 seq17062 98.7 2e-15 seq5586 96.9 8e-15 seq37209 91.5 3e-13 seq28967 91.5 3e-13 seq2919 91.5 3e-13 seq12920 89.7 1e-12 seq21267 87.8 4e-12 seq20612 87.8 4e-12 seq3952 87.8 4e-12 seq35633 84.2 5e-11 seq34111 84.2 5e-11 >seq16413 Length=4618 Score = 111 bits (122), Expect = 4e-19 Identities = 333/508 (66%), Gaps = 7/508 (1%) Strand=Plus/Plus Query 304985 ATTAA-AGGTAAAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAG 305043 ||||| ||| ||| || ||| || |||||||| ||| |||||| | || ||||||| Sbjct 1275 ATTAAGAGGAAAAACAGGACGTTTTAGAGGTAATTTAAGTGGAAAAAGAGTAGATTTTAC 1334 Query 305044 TGCAAGAAGTGTAATCACACCTGATTCTCAAATT--AGTCTTCATGAATTAGGAGTTCCA 305101 || ||||| ||||| | || ||| | ||||| || | || ||||||| ||||| Sbjct 1335 TGGAAGAACAGTAATAAGTCCGGATCC--AAATTTAAGAATAGATCAATTAGGCGTTCCT 1392 Query 305102 ATTGAAATTGCTTTAAAACTAACATTTCCAGAGAAAGTTAACGAGAAAAATATTAAACAT 305161 || || || | | |||||| |||||| | ||| || || | |||||| ||| Sbjct 1393 GTTTTTATGGCAATGATGTTAACATATCCAGAAAGAGTAAATGAAATAAATATGAAAAGA 1452 Query 305162 TTGAGACGTTGTGTTCTTAATGGAAATAGCAAGTATCCAGGTGCTCGTGCTGTTATAAAA 305221 ||| | | | | ||||| | || |||| |||||| | ||| |||| | Sbjct 1453 ATGAAAAAATTAATAATGAATGGTACAGATAAACATCCTGGTGCTAATTTTGTAATAACA 1512 Query 305222 CACAAGCAAAAGAAGACAATATCTTTGAACCATATCGATTTAAAACAATTCAGTAAAATG 305281 | || | || | ||||| ||| || || || | || || | ||| | Sbjct 1513 AATAATGGTGAAAATAAAATATATTTAGCTTATGTCAATAGAGAAAAAATATGTAGAGAA 1572 Query 305282 CTTGAAATTAATG-ATATTGTTATCAGACATTTGAATGACAATGATTGGGTTCTGTTCAA 305340 || ||| || | ||||||| || || || || || || ||| | || || Sbjct 1573 -TTAAAAGTAGGGGATATTGTGGAAAGGCACTTAAAAGATGGAGAAATTGTTTTATTTAA 1631 Query 305341 TAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTATCTGG 305400 ||| |||||||| || |||| | || || |||| | | | |||||| ||| || | Sbjct 1632 TAGACAACCATCTCTTCATAGGGTTTCAATTATGGGTTTCCATGCCAAAGTTTTACCTTG 1691 Query 305401 ATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGA 305460 || | |||| ||||||||| |||||| || | |||||| |||||||||||||| Sbjct 1692 GAGAACTATGAGATTCAATGTAAGTAATTGTACTCCATTTAATGCAGATTTTGATGGAGA 1751 Query 305461 TGAAATGAATATGCATGTACCTCAATCA 305488 |||||||||||| ||| | || ||| || Sbjct 1752 TGAAATGAATATTCATTTGCCACAAACA 1779 >seq17062 Length=1332 Score = 98.7 bits (108), Expect = 2e-15 Identities = 116/153 (76%), Gaps = 8/153 (5%) Strand=Plus/Plus Query 167202 AATATTTCAAAAGAGCACCTAAAATCTTTATTAATTATCATTACACCACCAGCATTATCG 167261 ||||||| ||||||||| | |||| || || |||| |||| | | |||| |||||| Sbjct 296 AATATTTGAAAAGAGCAAATTAAATTTTCATCAATTTTCATCATCGCTCCAGAATTATCA 355 Query 167262 AATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTAACTAATT---TACGATTGAAAAA 167317 ||||| | | || |||||||| || ||||| ||||||||||||| | | | |||| Sbjct 356 AATTC-TCCACAATAATTTGGCGCAGAAAAAACAGTAACTAATTGCCTTCCAGCGAAA-- 412 Query 167318 TAATTCATAACCATCTTCAACAACTTCATGGGC 167350 |||||||| || || |||||||||| ||| || Sbjct 413 -AATTCATATCCTTCCTCAACAACTTGATGTGC 444 >seq5586 Length=5471 Score = 96.9 bits (106), Expect = 8e-15 Identities = 140/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 227254 GATGATGATTTTATAATTGTGAATCGTCAGCCATCATTACATAAAAAATCAATATTATGT 227313 |||| |||||| |||| | |||||||| || ||| | ||||||| ||||| | | Sbjct 3888 GATGGAGATTTTGTAATATTTAATCGTCAACCTTCACTTCATAAAATGTCAATGATGGGA 3829 Query 227314 CATCGTGTTAGAATCCATAAGGATTTAGCAATTAGATTGAATCCTAAT--GTGACAGAGG 227371 |||||||||||||| | | ||| | ||||||| ||| | || || ||| Sbjct 3828 CATCGTGTTAGAATTCTTCCTCATTCTACTTTTAGATTAAAT--TTATCAGTTACAACTC 3771 Query 227372 GCTATAATGCAGATTTTGATGGAGATGAAATGAATGTCCATATACCTCAATCAATTGTGA 227431 |||||||| |||||||| ||||||||||||||| | ||| | || |||||| | | | Sbjct 3770 CATATAATGCTGATTTTGACGGAGATGAAATGAATTTACATTTTCCCCAATCATTAGAAA 3711 Query 227432 CTTCAACAGAGATTAA 227447 || | |||| ||||| Sbjct 3710 CTATATCAGAAATTAA 3695 Score = 87.8 bits (96), Expect = 4e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 || ||| | ||||| ||||| ||||||||||| ||||||| ||| || | | | | Sbjct 3870 TTTAATCGTCAACCTTCACTTCATAAAATGTCAATGATGGGACATCGTGTTAGAATTCTT 3811 Query 305396 TCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGAT 305455 || | || ||| |||||||| || | | || || |||||||| |||||||| Sbjct 3810 CCTCATTCTACTTTTAGATTAAATTTATCAGTTACAACTCCATATAATGCTGATTTTGAC 3751 Query 305456 GGAGATGAAATGAATATGCATGTACCTCAATCA 305488 ||||||||||||||| | ||| | || |||||| Sbjct 3750 GGAGATGAAATGAATTTACATTTTCCCCAATCA 3718 >seq37209 Length=2540 Score = 91.5 bits (100), Expect = 3e-13 Identities = 127/180 (71%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 167675 ACGTCGTTTGCATTCATCGTAAAAACCATAGTCTCT-TGAGATATCAGCACATTCGTGAT 167733 ||||| |||||||||||| ||||| || || ||| | || || | | | ||||||||| Sbjct 1406 ACGTCTTTTGCATTCATCATAAAAGCCGTAAATTCTGTTAG-TAACGGAAGATTCGTGAT 1464 Query 167734 TTCCTCTTAATAAAATTATGTTATTTNNNNNNNNNNNNNTGTAGCAAAATAATAACAAAA 167793 ||||||| | | | ||| || || | ||||||| ||||| ||| Sbjct 1465 TTCCTCTAAGAAGAGTTACTTTCGTTGGATATTTTATTTTATAGCAAAGCAATAAACAAA 1524 Query 167794 TTGTTTCTAATGATTTAACACCTCTATCAACATAATCACCTAAAAATATATATTTATTTT 167853 ||||||||| |||| ||||| ||||||||||| |||||||||| ||| |||| || Sbjct 1525 CTGTTTCTAAAGATTGCTTTCCTCTGTCAACATAATCTCCTAAAAATAAATAATTATATT 1584 >seq28967 Length=8776 Score = 91.5 bits (100), Expect = 3e-13 Identities = 330/505 (65%), Gaps = 16/505 (3%) Strand=Plus/Plus Query 304988 AAAGGTAAAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCA 305047 ||||| ||||| || | || |||||||||| ||||||||| | || || ||||||||| Sbjct 2958 AAAGGAAAAGAAGGAAGAGTTAGAGGTAATCTCATGGGAAAAAGAGTAGACTTTAGTGCA 3017 Query 305048 AGAAGTGTAATCACACCTGATTCTCAAATTAGTCTTC-ATGAATTAGGAGTTCCAATTGA 305106 |||||||| || |||||||| || || ||| | |||||||||| || || || Sbjct 3018 AGAAGTGTTATATCACCTGATCCT-AATTTACAAGTGGATGAATTAGGTGTCCCTCTTTC 3076 Query 305107 AATTGCTTTAAAACTAACATTTCCAGAGAAAGTTAACGAGAAAAATATTAAACATTTGAG 305166 ||| || | || |||| |||||||| || | || |||||| | | || | Sbjct 3077 AATAGCCATGAATTTAACTTTTCCAGAAGTTGTCACTGATTTAAATATCGAGAAGTTAAA 3136 Query 305167 ACGTTGTGTTCTTAATGGAAATAGCAAGTATCCAGGTGCTCGTGCTGTTATAAAACACAA 305226 | | || | ||||| || || || ||||| || | |||| | || Sbjct 3137 AAAATTAGTAATAAATGGTCCTACAAAATACCCAGGGGCAAAAA---TGATAAGATCCAC 3193 Query 305227 GCAAAAGAAGACAATATC--TTTGAACCATATCGATTTAAAACAATTCAGTAAAATGCTT 305284 | ||||| | ||| ||| || |||| | || | | || | || || || Sbjct 3194 TGATG-GAAGA-ATTATTGATTTAAA--ATATAGTTTGCATAGAACAGATGAACAT-CTC 3248 Query 305285 GAAATTAATG--ATATTGTTATCAGACATTTGAATGACAATGATTGGGTTCTGTTCAATA 305342 |||| || | |||| || | ||| || | || ||||| || | |||||| Sbjct 3249 GAAA--AAGGCTATATAGTCGAACGTCATATGCAAAACGGTGATTATGTAATATTCAATC 3306 Query 305343 GGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTATCTGGAT 305402 | |||||||| || || |||||||| ||||||| ||| ||| | ||||| || | Sbjct 3307 GTCAACCATCTCTTCACAAAATGTCAATGATGGGTCACCGTGTCCATATATTACCTTATT 3366 Query 305403 TGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATG 305462 || || |||||||| || | ||| || |||||||| ||||| || || |||| Sbjct 3367 CAACCTTCAGATTAAATTTATCCGTAACTACTCCATATAATGCCGATTTCGACGGTGATG 3426 Query 305463 AAATGAATATGCATGTACCTCAATC 305487 ||||||| | ||| | |||||||| Sbjct 3427 AAATGAACTTACATCTTCCTCAATC 3451 >seq2919 Length=5776 Score = 91.5 bits (100), Expect = 3e-13 Identities = 110/147 (75%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 304988 AAAGGTAAAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCA 305047 ||||| ||||| || | || |||| ||||| ||||||||| | || |||| ||||||| Sbjct 1371 AAAGGAAAAGAAGGAAGAGTTAGAGGCAATCTCATGGGAAAAAGAGTAGATTATAGTGCA 1430 Query 305048 AGAAGTGTAATCACACCTGATTCTCAAATTA-GTCTTCATGAATTAGGAGTTCCAATTGA 305106 ||||||||||| | |||||| || || ||| | |||||||||| |||||| || Sbjct 1431 AGAAGTGTAATTTCGCCTGATCCT-AATTTACAAGTGGATGAATTAGGTGTTCCACTTTC 1489 Query 305107 AATTGCTTTAAAACTAACATTTCCAGA 305133 ||| || | || | || |||||||| Sbjct 1490 AATCGCGATGAATTTGACTTTTCCAGA 1516 >seq12920 Length=1534 Score = 89.7 bits (98), Expect = 1e-12 Identities = 135/190 (71%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 72220 GTAATGAAGAATTGCGAGTT--ATTTGAATCAGGACCCGAGTTAGCCATAGAAACCAAAC 72277 ||||||||||||| || || ||| | || |||||| | ||||||||||||| ||| Sbjct 979 GTAATGAAGAATT--GACTTCCATTAGTATTAGGACCAGCATTAGCCATAGAAAGATAAC 1036 Query 72278 CTGCTTCTGAATGCTTTAATAAGAAATTCTCATCTTCAAAAGTTTCTCCATATATACTTT 72337 | | | || |||| || | | |||||||||||| | || | | ||||| ||||||| Sbjct 1037 CAGGTCCTAAATGTTTAAGTTTGAAATTCTCATCAGCGAATTTAGCACCATAAATACTTT 1096 Query 72338 GACCTGAGCTTCCATCAAAGTTCACAATATCACCTCCTTGAACCATAAAATTATTAATTA 72397 ||| |||||| | || | ||| |||||||||| |||||| || ||||| Sbjct 1097 CACCACCAGTTCCATTACCATTAGTGAAATCTCCTCCTTGAATCATAAAGTTTGGAATTA 1156 Query 72398 CTCTATGGAA 72407 ||| ||||| Sbjct 1157 TTCTGTGGAA 1166 Score = 86.0 bits (94), Expect = 1e-11 Identities = 134/190 (71%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 72220 GTAATGAAGAATTGCGAGTT--ATTTGAATCAGGACCCGAGTTAGCCATAGAAACCAAAC 72277 ||||||||||||| || || ||| | || |||||| | ||||||||||||| ||| Sbjct 108 GTAATGAAGAATT--GACTTCCATTAGTATTAGGACCAGCATTAGCCATAGAAAGATAAC 165 Query 72278 CTGCTTCTGAATGCTTTAATAAGAAATTCTCATCTTCAAAAGTTTCTCCATATATACTTT 72337 | | | || |||| || | | ||| |||||||| | || | | ||||| ||||||| Sbjct 166 CAGGTCCTAAATGTTTAAGTTTGAAGTTCTCATCAGCGAATTTAGCACCATAAATACTTT 225 Query 72338 GACCTGAGCTTCCATCAAAGTTCACAATATCACCTCCTTGAACCATAAAATTATTAATTA 72397 ||| |||||| | || | ||| |||||||||| |||||| || ||||| Sbjct 226 CACCACCAGTTCCATTACCATTAGTGAAATCTCCTCCTTGAATCATAAAGTTTGGAATTA 285 Query 72398 CTCTATGGAA 72407 ||| ||||| Sbjct 286 TTCTGTGGAA 295 >seq21267 Length=1125 Score = 87.8 bits (96), Expect = 4e-12 Identities = 90/116 (78%), Gaps = 4/116 (3%) Strand=Plus/Plus Query 167813 ACCTCTATCAACATAATCACCTAAAAATATATATTTATTTTGGTTTGAAGGATTATCTAG 167872 ||||||||| ||||| ||||||||||||| |||| ||||| | || | || | || Sbjct 787 ACCTCTATCGACATAGTCACCTAAAAATAAATAT---TTTTGTTCTGGAATATCACCTCC 843 Query 167873 TTTTTTAAAAATATTCAATAAATCACTAAATTGACCATGTAAATCACCTACAACCT 167928 | |||||| ||||| ||||||||| ||||||||| || | |||||| |||| || Sbjct 844 TACTTTAAATATATTTAATAAATCAAAAAATTGACCGTGAATATCACC-ACAAACT 898 >seq20612 Length=1156 Score = 87.8 bits (96), Expect = 4e-12 Identities = 165/243 (68%), Gaps = 13/243 (5%) Strand=Plus/Minus Query 167683 TGCATTCATCGTAAAAACCATAGTCTCTTGAGATATCAGC--ACATTCGTGATTTCCTCT 167740 |||||||||| ||||| ||||| || || | ||| || || ||| || || ||||| Sbjct 508 TGCATTCATCATAAAATCCATATACT--TGTGTTATTTGCCTACTTTCATGGTTACCTCT 451 Query 167741 TAATAAAATTATGTTATTTNNNNNNNNNNNNNTGTAGCAAAATAATAACAAAATTGTTTC 167800 || |||| ||| |||| | |||| |||||||| |||| |||| Sbjct 450 TATTAAATATATTCTATTAGGATATCTTATTTTTAAGCATAATAATAATGAAATGATTTC 391 Query 167801 TAATGATTTAACACCTCTATCAACATAATCACCTAAAAATATATATTTATTTTGGTTTGA 167860 || ||| | | |||||||||||||| || |||||||||| ||| |||| ||||| Sbjct 390 TACTGAATAATATCCTCTATCAACATAGTCTCCTAAAAATAAATA---ATTTGTGTTTGG 334 Query 167861 AGGAT---TATCTAGTTTTTTAAAAATATTCAATAAATCACTAAATTGACCATGTAAATC 167917 || ||| | ||||||| || | || || ||| |||||||||||| | ||| Sbjct 333 TACATCTCCATCGA---TTTTAAATATTTCCATTAGGTCAAAAAATTGACCATGAATATC 277 Query 167918 ACC 167920 ||| Sbjct 276 ACC 274 >seq3952 Length=5625 Score = 87.8 bits (96), Expect = 4e-12 Identities = 149/214 (70%), Gaps = 3/214 (1%) Strand=Plus/Plus Query 278682 AATTTAAACAAGTATCTTTTGTTAATGGTATTAATACTTCAAAAGGTGGAAAACATGTTG 278741 ||||| | |||||| ||| ||||||| |||| ||| | ||||||||||| || || | Sbjct 1030 AATTTCAGCAAGTAAGTTTCGTTAATGCTATTTCAACTACTAAAGGTGGAAAGCACGTAG 1089 Query 278742 ATTATGTTCTTAATAAGATTGTGAAGAAGATTTCAGAGATAATTGAGAAGAAGGA-AAAG 278800 ||||| | || |||| || | || || || | ||| | || || || ||| Sbjct 1090 ATTATTGTGTTGATAAAATAATTAAAGTAATAATGGAAAAAATAGCAAAAAAAGACAAAA 1149 Query 278801 ATT--AAGGTAAAATCAAATAATATTAAAGAACACTTGTTTATATTTGTAAATTGTTTGA 278858 ||| || | ||| | | |||||||| |||| || | |||||||| |||||||| | Sbjct 1150 ATTTGAATATCAAACCTCAACATATTAAACAACATTTATGGATATTTGTGAATTGTTTAA 1209 Query 278859 TTATAAATCCTTCATTTGATTCGCAAACGAAAGA 278892 || |||||| ||| ||| ||||||||||| Sbjct 1210 TTGAAAATCCGGTATTCAGTTCACAAACGAAAGA 1243 >seq35633 Length=2778 Score = 84.2 bits (92), Expect = 5e-11 Identities = 114/154 (74%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 167202 AATATTTCAAAAGAGCACCTAAAATCTTTATTAAT-TATCATTACACCACCAGCATTATC 167260 ||||| | || || || | ||||||| ||||| ||| || || | ||| |||||| Sbjct 2623 AATATATGTAATGAACATGTCAAATCTTCATTAACATATAAT-ACTGCTCCATTATTATC 2565 Query 167261 GAATTCATTCGCATAATTTGGTGCTGAAAATACAGTAACTAATTT-ACGATTGAAAAATA 167319 || ||||| |||||||||||||| ||| | ||||| |||||| | | | | |||| | Sbjct 2564 AAAAACATTCATATAATTTGGTGCTGTAAAAATAGTAATTAATTTCATGTTAGCAAAA-A 2506 Query 167320 ATTCATAACCATCTTCAACAACTTCATGGGCACG 167353 ||| |||| ||||||||||||| ||| || || Sbjct 2505 ATTGGAAACCTTCTTCAACAACTTGATGAGCTCG 2472 >seq34111 Length=3014 Score = 84.2 bits (92), Expect = 5e-11 Identities = 104/138 (75%), Gaps = 6/138 (4%) Strand=Plus/Minus Query 167216 GCACCTAAAATCTTTATTAATTATCATTACACCACCAGCATTATCGAATTCATTCGCATA 167275 |||| | ||||||||||| | |||| | | | |||||||||||||||||| ||| Sbjct 1120 GCACATTAAATCTTTATTTACAGTCATAAAAGCTCCAGCATTATCGAATTCACCACAATA 1061 Query 167276 ATTTGGTG--CTGAAAATACAGTAACTAATTTACGATTGA-AAAATAATTCATAACCATC 167332 ||| || | |||||| |||||||| || || | |||| ||| |||||||| |||| Sbjct 1060 ATTCGGCGCACTGAAA--ACAGTAACCAA-TTGCCTTTGAGCAAAGAATTCATATCCATT 1004 Query 167333 TTCAACAACTTCATGGGC 167350 ||| ||||||| ||| || Sbjct 1003 TTCCACAACTTGATGTGC 986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186242041326135