Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entodinium_20caudatum_20[genbank_20GCA_5F002087855.1_202017-04-12] 37,535 sequences; 81,718,944 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq17428 134 3e-26 seq33152 132 1e-25 seq22541 122 2e-22 seq18875 122 2e-22 seq6985 95.1 3e-14 seq28493 91.5 3e-13 seq24576 91.5 3e-13 >seq17428 Length=1321 Score = 134 bits (148), Expect = 3e-26 Identities = 169/229 (74%), Gaps = 5/229 (2%) Strand=Plus/Minus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| || |||||| ||||| |||||||||||||| |||||| | || || ||| Sbjct 1169 AAAATG---CAAATATTTGTTAAAACACTCACAGGAAAAACCATCACTCTCGATGTAGAA 1113 Query 206224 AGTTCTGACACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCC 206282 ||||||||| | ||| || ||||| |||||| ||||| |||||||| ||| || Sbjct 1112 CCTTCTGACACCATTGAAAATGTCAAAGC-AAAGATCCAAGACAAAGAAGGTATTCCTCC 1054 Query 206283 GGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGA 206342 || |||||| | |||||||| ||||| || || || || || ||| | || || Sbjct 1053 AGATCAACAAAGATTAATCTTCGCAGGAAAACAATTAGAGGACAACAGAACTCTTGCTGA 994 Query 206343 TTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||||| |||| || || || ||||||||| | || | |||||| || Sbjct 993 TTACAACATCCAAAAGGAATCAACTCTTCACTTAGTCCTCAGACTTAGA 945 Score = 102 bits (112), Expect = 2e-16 Identities = 138/190 (73%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| | || |||||||| |||||| | || || ||| |||||| || | ||| Sbjct 924 CAAAACTTTGACCGGAAAAACCATCACTCTTGATGTTGAACCTTCTGATACTATTGAAAA 865 Query 206244 AGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 || ||||| ||| |||||||| |||||||| ||| || || |||||| | |||| Sbjct 864 TGTCAAAGCCAAA-ATTCAAGACAAAGAAGGTATTCCTCCAGATCAACAAAGATTAATCT 806 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 |||| ||||| || | || || || ||| | ||||||||||| |||| || || | Sbjct 805 TCGCTGGAAAACAACTTGAGGACAATAGAACTCTTGCCGATTACAATATCCAAAAGGAAT 746 Query 206363 CTACTCTTCA 206372 | |||||||| Sbjct 745 CAACTCTTCA 736 >seq33152 Length=3236 Score = 132 bits (146), Expect = 1e-25 Identities = 163/220 (74%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || |||||| |||||| ||||| || ||||| |||||||| || || ||| ||||||| Sbjct 2453 CAAATATTTGTCAAAACCCTCACTGGTAAAACTATCACTTTAGATGTTGAACCTTCTGAC 2512 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || |||| || ||||| ||| || ||||| |||||||| ||| || || || Sbjct 2513 ACCATCGAGAATGTCAAAGCCAAA-ATCCAAGACAAAGAAGGTATTCCTCCAGATCAACA 2571 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 |||| | ||||||||||| || || || || || || || || |||||||||||| | Sbjct 2572 AAGATTAATCTTCGCCGGTAAACAATTAGAGGACAACAGAACCTTAGCCGATTACAACAT 2631 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||| || || || ||||||||| | || | |||||| || Sbjct 2632 CCAAAAGGAATCAACTCTTCACTTAGTCCTCAGACTTAGA 2671 Score = 122 bits (134), Expect = 2e-22 Identities = 154/209 (74%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| ||||| || ||||| ||||| || || || ||| ||||||||| ||||| Sbjct 2692 CAAAACTCTCACCGGTAAAACTATCACCTTAGATGTTGAACCTTCTGACACCATCGAAAA 2751 Query 206244 AGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 || ||||| ||| || ||||| |||||||| || || || |||||| | |||| Sbjct 2752 CGTTAAAGCCAAA-ATCCAAGACAAAGAAGGTATCCCACCAGATCAACAAAGATTAATCT 2810 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 ||||||| || || || || || || ||| | |||||||||||| |||| || || | Sbjct 2811 TCGCCGGTAAACAATTAGAGGACAACAGAACTCTTGCCGATTACAACATCCAAAAGGAAT 2870 Query 206363 CTACTCTTCACCTTGTTTTGAGACTTCGA 206391 | ||||||||| | || | |||||| || Sbjct 2871 CAACTCTTCACTTAGTCCTCAGACTTAGA 2899 Score = 100 bits (110), Expect = 7e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| || || || ||||| ||||| || || || ||| |||||| || | ||| Sbjct 2920 CAAAACCCTTACTGGTAAAACTATCACCTTAGATGTTGAACCTTCTGATACCATTGAAAA 2979 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||| || ||||| |||||||| || || || || ||| | ||||| Sbjct 2980 CGTTAAGGCAAAAATCCAAGACAAAGAAGGTATCCCACCAGATCAACAGAGATTAATCTT 3039 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||| || || || || || || || || |||||||||||| |||| || || || Sbjct 3040 CGCCGGTAAACAATTAGAGGACAACAGAACCTTAGCCGATTACAACATCCAAAAGGAATC 3099 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCGA 206391 |||||||| | || | |||||| || Sbjct 3100 AACTCTTCATTTAGTCCTCAGACTTAGA 3127 >seq22541 Length=1059 Score = 122 bits (134), Expect = 2e-22 Identities = 154/209 (74%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| | || |||||||| |||||| | || || ||| ||||||||| ||||| Sbjct 657 CAAAACTTTGACCGGAAAAACCATCACTCTCGATGTTGAACCTTCTGACACTATCGAAAA 598 Query 206244 AGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 || ||||| || ||| ||||| |||||||| ||| || || |||||| | |||| Sbjct 597 TGTCAAAGCCAA-GATCCAAGACAAAGAAGGTATTCCTCCAGATCAACAAAGATTAATCT 539 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 |||| ||||| || | || ||| || ||| | ||||||||||| |||| ||||| | Sbjct 538 TCGCAGGAAAACAACTTGAGGATAATAGAACTCTTGCCGATTACAATATCCAAAAAGAAT 479 Query 206363 CTACTCTTCACCTTGTTTTGAGACTTCGA 206391 | ||||||||| | || | |||||| || Sbjct 478 CAACTCTTCACTTAGTCCTCAGACTTAGA 450 >seq18875 Length=1247 Score = 122 bits (134), Expect = 2e-22 Identities = 154/209 (74%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| | || |||||||| |||||| | || || ||| ||||||||| ||||| Sbjct 411 CAAAACTTTGACTGGAAAAACCATCACTCTCGATGTTGAACCTTCTGACACCATCGAAAA 470 Query 206244 AGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 || ||||| ||| || ||||| |||||||| ||| || || |||||| | |||| Sbjct 471 TGTCAAAGCCAAA-ATACAAGACAAAGAAGGTATTCCTCCAGATCAACAAAGATTAATCT 529 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 |||||||||| || | || || || ||| | ||||||||||| |||| ||||| | Sbjct 530 TCGCCGGAAAACAACTTGAGGACAATAGAACTCTTGCCGATTACAATATCCAAAAAGAAT 589 Query 206363 CTACTCTTCACCTTGTTTTGAGACTTCGA 206391 | ||||||||| | || | |||||| || Sbjct 590 CAACTCTTCACTTAGTCCTCAGACTTAGA 618 >seq6985 Length=5336 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 206252 AAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAA 206311 ||||||||||||| || |||||||| ||| || ||||| | || || || || | Sbjct 5044 AAAAGATTCAAGATAAGGAAGGAATACCGCCTGATCAACAAAGGATGATATTTGCTGGGA 5103 Query 206312 AGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTC 206371 | || ||||| ||| ||||||||||| ||||||||| | ||||| | ||||||| Sbjct 5104 AACAATTGGAGGATAATAGGACTTTGGCTGATTACAACATTCAGAAGAATAGCACTCTTC 5163 Query 206372 ACCTTGTTTTGAGACTTCGA 206391 | |||||||| |||||| || Sbjct 5164 ATCTTGTTTTAAGACTTAGA 5183 >seq28493 Length=728 Score = 91.5 bits (100), Expect = 3e-13 Identities = 126/174 (72%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 206200 AAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAAGCAAAAGAT 206258 || || || ||||| || || ||| ||||| ||| | || || ||||| || ||| Sbjct 190 AAGACAATTACTTTAGATGTAGAACCATCTGATACAATAGAGAATGTGAAAGCTAA-GAT 248 Query 206259 TCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTT 206318 |||||| || ||||||||| || || ||||||||||| || || || | || || Sbjct 249 TCAAGATAAGGAAGGAATTCCCCCAGATCAACAAAGACTTATTTTTGCTGGTATACAATT 308 Query 206319 GGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 ||||||| ||||||||| | ||||| || |||| ||||| | |||||||| Sbjct 309 GGAAGATAAAAGGACTTTAGTTGATTATAATATCCAAAAAGATTTAACTCTTCA 362 >seq24576 Length=959 Score = 91.5 bits (100), Expect = 3e-13 Identities = 160/230 (70%), Gaps = 5/230 (2%) Strand=Plus/Minus Query 206144 GAAATATATAAAGTAAGGCTAAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAA 206203 |||||| ||||| |||| |||||| || |||| | |||||| | |||||||||| Sbjct 830 GAAATAAATAAATTAAGTTAAAAATG---CAAATATATGTCAAAACATTAACAGGAAAAA 774 Query 206204 CGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCG-AATCAGTAAAGCAAAAGATTCAA 206262 | | || | || || ||| || || | | || || ||||| ||| |||||| Sbjct 773 CATTAACAATAGATTGTGAGCCTTCAGATACTATAGAAAACATCAAAGCTAAA-ATTCAA 715 Query 206263 GAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAA 206322 || |||||||| ||| || || |||||| | || | || |||||||| || ||| Sbjct 714 GATAAAGAAGGCATTCCTCCTTACCAACAAAGATTAATTTATGCAGGAAAGCAATTAGAA 655 Query 206323 GATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 ||| |||||||| || ||||| || | || | ||| |||||||| || Sbjct 654 GATAATAGGACTTTAGCAGATTATAATATTCAAAGAGAATCTACTCTCCA 605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181252442064735