Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entodinium_20caudatum_20[genbank_20GCA_5F002087855.1_202017-04-12] 37,535 sequences; 81,718,944 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq17428 104 2e-17 seq18875 100 2e-16 seq22541 96.9 3e-15 seq33152 91.5 1e-13 >seq17428 Length=1321 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTC 27097 ||||| || | || || |||||||| || |||||||| || ||| | | |||||| Sbjct 274 ACCAAGTGAAGAGTTGATTCTTTTTGGATGTTGTAGTCAGCGAGAGTTCTGTT-GTCTTC 332 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 | ||||| || ||| | || | | |||||||| || || | ||| ||||| || Sbjct 333 TAATTGTTTTCCTGCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTG 392 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||||||| ||| | | |||| | ||||| | | |||||| || ||||| || | ||| Sbjct 393 GATCTTGGCTTTGACGTTTTCAATGGTGTCAGAAGGTTCAACGTCAAGAGTGATGGTTTT 452 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || |||| |||||| || |||||||||||| Sbjct 453 TCCAGTCAAAGTTTTGACGAAGATTTGCATA 483 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 || ||||| | || || || ||||| |||||||| ||| | | | | ||| || Sbjct 730 ACTAAATGAAGAGTTGATTCCTTTTGGATATTGTAATCGGCAAGAGTTCTATTGTCCTCA 789 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || ||||| || ||| | || | | |||||||| || || | ||| ||||| || Sbjct 790 AGTTGTTTTCCAGCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGA 849 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 || ||| ||| | |||| | ||| || | | |||||| || ||||| || | ||| Sbjct 850 ATTTTGGCTTTGACATTTTCAATAGTATCAGAAGGTTCAACATCAAGAGTGATGGTTTTT 909 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || |||| |||||| || |||||||||||| Sbjct 910 CCGGTCAAAGTTTTGACGAAGATTTGCATA 939 >seq18875 Length=1247 Score = 100 bits (110), Expect = 2e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || |||||||| || |||||||| || ||| | | ||| || | ||||| || Sbjct 1049 GTTGATTCTTTTTGGATGTTGTAGTCAGCGAGAGTTCTGTT-GTCCTCTAATTGTTTTCC 991 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 ||| |||| | | |||||||| || || | ||| ||||| || ||||||| ||| Sbjct 990 TGCGAAAATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGGATCTTGGCTTT 931 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | |||| | ||||| | | |||||| || ||||| || | ||| || |||| ||| Sbjct 930 GACGTTTTCAATGGTGTCAGAAGGTTCAACATCAAGAGTGATGGTTTTTCCAGTCAAAGT 871 Query 27230 TTTCACAAAGATTTGCATA 27248 ||| || |||||||||||| Sbjct 870 TTTGACGAAGATTTGCATA 852 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || |||||||| |||||||| ||| | | | | ||| || || ||||| ||| Sbjct 593 GTTGATTCTTTTTGGATATTGTAATCGGCAAGAGTTCTATTGTCCTCAAGTTGTTTTCCG 534 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || | | |||||||| || || | ||| ||||| || || ||| ||| Sbjct 533 GCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGTATTTTGGCTTTG 474 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | |||| | ||||| | | |||||| || ||||| || | ||| || |||| |||| Sbjct 473 ACATTTTCGATGGTGTCAGAAGGTTCAACATCGAGAGTGATGGTTTTTCCAGTCAAAGTT 414 Query 27231 TTCACAAAGATTTGCATA 27248 || || |||||||||||| Sbjct 413 TTGACGAAGATTTGCATA 396 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || |||||||| || ||||| || || |||| | | ||| || | ||||| || Sbjct 821 GTTGATTCTTTTTGGATGTTGTAATCAGCGAGTGTT-CTATTGTCCTCTAATTGTTTTCC 763 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 || | || | | |||||||| || || | ||| ||||| || ||||||| ||| Sbjct 762 TGCAAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGGATCTTGGCTTT 703 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | |||| | ||| || | | |||||| || ||||| || | ||| || |||| ||| Sbjct 702 GACGTTTTCAATAGTATCAGAAGGTTCAACATCAAGAGTGATGGTTTTTCCAGTCAAAGT 643 Query 27230 TTTCACAAAGATTTGCATA 27248 ||| || |||||||||||| Sbjct 642 TTTGACGAAGATTTGCATA 624 >seq22541 Length=1059 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || |||||||| |||||||| ||| | | | | || || || ||||| || Sbjct 475 GTTGATTCTTTTTGGATATTGTAATCGGCAAGAGTTCTATTATCCTCAAGTTGTTTTCCT 534 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || | | |||||||| || || | ||| ||||| || ||||||| ||| Sbjct 535 GCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGGATCTTGGCTTTG 594 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | |||| | |||||| | | |||||| || ||||| || | ||| || |||| |||| Sbjct 595 ACATTTTCGATAGTGTCAGAAGGTTCAACATCGAGAGTGATGGTTTTTCCGGTCAAAGTT 654 Query 27231 TTCACAAAGATTTGCATA 27248 || || |||||||||||| Sbjct 655 TTGACGAAGATTTGCATA 672 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || ||||| || ||||| || || ||| | | |||||| | ||||| || Sbjct 247 GTTGATTCCTTTTGGATGTTGTAATCAGCGAGAGTTCTGTT-GTCTTCTAATTGTTTTCC 305 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 ||| | || | | |||||||| || || | ||| ||||| || ||||||| ||| Sbjct 306 TGCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGGATCTTGGCTTT 365 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | |||| | |||||| | | |||||| || || || || | ||| || |||| ||| Sbjct 366 GACATTTTCGATAGTGTCAGAAGGTTCAACATCAAGGGTGATGGTTTTTCCGGTCAAAGT 425 Query 27230 TTTCACAAAGATTTGCATA 27248 ||| ||||||||||||||| Sbjct 426 TTTGACAAAGATTTGCATA 444 >seq33152 Length=3236 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || ||||| || ||||| ||| | | | | ||| || | ||||||||| Sbjct 2874 GTTGATTCCTTTTGGATGTTGTAATCGGCAAGAGTTCTGTTGTCCTCTAATTGTTTACCG 2815 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || | | |||||||| || || | ||| ||||| || ||| ||| ||| Sbjct 2814 GCGAAGATTAATCTTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGGATTTTGGCTTTA 2755 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | |||| | ||||| | | |||||| |||| || |||| ||| || || |||||| Sbjct 2754 ACGTTTTCGATGGTGTCAGAAGGTTCAACATCTAAGGTGATAGTTTTACCGGTGAGAGTT 2695 Query 27231 TTCACAAAGATTTGCATA 27248 || || |||||||||||| Sbjct 2694 TTGACGAAGATTTGCATA 2677 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCG-CTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || ||||| || ||||| ||| || | ||| | | ||| || | |||||||| Sbjct 2646 GTTGATTCCTTTTGGATGTTGTAATCGGCTAAGGTTCTGTT-GTCCTCTAATTGTTTACC 2588 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 |||| | || | | |||||||| || || | ||| ||||| || ||| ||| ||| Sbjct 2587 GGCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGGATTTTGGCTTT 2528 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | ||||| | | |||||| |||| ||| |||| ||| || || || || Sbjct 2527 GACATTCTCGATGGTGTCAGAAGGTTCAACATCTAAAGTGATAGTTTTACCAGTGAGGGT 2468 Query 27230 TTTCACAAAGATTTGCAT 27247 ||| ||||| |||||||| Sbjct 2467 TTTGACAAATATTTGCAT 2450 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCG-CTCATGTTGCGCTCGTCTTC 27097 || ||||| | || || || ||||| || ||||| ||| || | ||| | | ||| || Sbjct 3114 ACTAAATGAAGAGTTGATTCCTTTTGGATGTTGTAATCGGCTAAGGTTCTGTT-GTCCTC 3056 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 | |||||||||||| | || | | ||||||||| || || | ||| ||||| || Sbjct 3055 TAATTGTTTACCGGCGAAGATTAATCTCTGTTGATCTGGTGGGATACCTTCTTTGTCTTG 2996 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||| || || | | |||| | || || | | |||||| |||| || |||| ||| Sbjct 2995 GATTTTTGCCTTAACGTTTTCAATGGTATCAGAAGGTTCAACATCTAAGGTGATAGTTTT 2936 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || ||||| || |||||||||||| Sbjct 2935 ACCAGTAAGGGTTTTGACGAAGATTTGCATA 2905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424740010438920