Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entodinium_20caudatum_20[genbank_20GCA_5F002087855.1_202017-04-12] 37,535 sequences; 81,718,944 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq3952 132 2e-26 seq21214 100 1e-16 >seq3952 Length=5625 Score = 132 bits (146), Expect = 2e-26 Identities = 528/807 (65%), Gaps = 53/807 (7%) Strand=Plus/Minus Query 64828 CAATTTATATTTCAAGTAATCAATGATTTCTAACGGATTATAACACATAATGTCAGTACT 64887 ||||||| |||| || | | || ||||| ||||||| |||| | | | | || Sbjct 2717 CAATTTAGATTTTAAAGATTGAACTATTTCATGCGGATTAAAACAAGGCAATTGACTTCT 2658 Query 64888 AAATCCTGTGCCAATACCCTTTGAGCCATTTATTAAAATCATCGGAATAATTGGTGCATA 64947 | || || || ||||| | | ||||||| |||||||||||| || || || ||| Sbjct 2657 CCAACCAGTTCCTATACCTTCACATCCATTTACTAAAATCATCGGGATTATGGGCAAATA 2598 Query 64948 AAAGATAGGCTCAACAATGAGACCATCATC--ATCCA-AATACTTCAAAATGGCATCATC 65004 | ||||||| | | | || || || || | ||| | |||| | ||||| Sbjct 2597 CCAATTAGGCTCGATTTTTTGGCCTTCTTCGAATATATAATCCATCAAGGGTGAATCATT 2538 Query 65005 CTCTTTTGGAAATATAGAACGAGTTATTTTATTCAATTGAGTATAAATATATCTTTCGGA 65064 | || ||||| | | |||| ||||| |||| |||| |||||||||| || | Sbjct 2537 TTGATT---AAATAAATGTCTTGTTACCTTATTTAATTCAGTAAAAATATATCT--CGAA 2483 Query 65065 --TGCGTGGTCTTG---TCCAGTTCGTCGTGTTCCAAACTGACCATTTGGCATTAATAAA 65119 ||| ||||| ||| | || ||| || || |||||||||||||| | |||| Sbjct 2482 CTTGCACAGTCTTTGCCTCCTTTATTTCTTGTACCGAATTGACCATTTGGCATAAGTAAA 2423 Query 65120 TTAATATTGTTTGAACCAATAAAATTCTGAGCCATTCCG---ATAATTGCTGCATTTAAA 65176 || ||||| |||||||| | ||||||||||||||| || ||| || | ||| | Sbjct 2422 TTGATATTATTTGAACCTACGAAATTCTGAGCCATTGCGACTATAGTTCCAGCAAGGGA- 2364 Query 65177 CTCGCTTCACCGTGATGATATCCTGAATGTTCAGAGACATATCC-ACTAAATTGAGCAAC 65235 | | ||| || || | ||| | | ||||||| | ||| || ||| ||||| || || Sbjct 2363 -TTG-TTCTCCATGTTTATAAGCAGTATGTTCACTAATATAACCGACT-AATTGCGCTAC 2307 Query 65236 TTTTATTTCCGTTGTTAAATTCTTTTTAAATGCAGAATACAATATTTTCCGTAAACTAAT 65295 ||||||||| | ||||||| || || || ||| |||||||| | | ||| Sbjct 2306 TTTTATTTCTTCTCTTAAATTTTTCTTGAAACATCCATATAATATTTTTCTTTCACTTGG 2247 Query 65296 TTTCAATCCATCCATTAAATTAGGAATGCTTCTGTCACAATCATATTTTGAGAAATGTAT 65355 |||||||||||| | | |||||| || || | | |||||| | || || ||| Sbjct 2246 TTTCAATCCATCACACACAGAAGGAATACTCCTTTGATTATCATACATGGAAAATAATAT 2187 Query 65356 GAATTCTTTGTTAATAAATTCTTCATATGAAACACTCGTATTATCTGTATTCAAATAACT 65415 | ||| ||||||| |||| | || |||| | | |||| ||||||| Sbjct 2186 CAGTTCCCTGTTAATGAATTTATTGTAAGAAATTTTTGACACATCTAAATTCAAA----G 2131 Query 65416 ATCGCG-ATTA-----TATTTTTCTAA-CCATTCTTTTCTATCACTTGAGCGTTT--TTA 65466 | | | |||| | || ||| ||| | |||||| || || | | ||| ||| Sbjct 2130 GTGGTGTATTAGGGTCGAAATTCATAAGCCAATTTTTTCTTTC-CTCGGTCTTTTTCTTA 2072 Query 65467 TTAAATATTAAATCAATGGTCTCATCACTTTCTTT-GCCTGTATGTTCAAATCCAACAAT 65525 ||||| | ||||||| | |||||| | ||||| || ||| |||||| | |||| Sbjct 2071 TTAAAAGCCATATCAATGCTTTCATCA-TCTCTTTCATCTTTATATTCAAA---ATCAAT 2016 Query 65526 TTTCTTTTGTTTAAAATATTCACGAA--ATTCTT-TTCCT-----GTGCTT---GTTCCA 65574 | | | | ||| ||||||| |||| |||||| ||| | ||| || || Sbjct 2015 TCTATGTCGTT--GAATATTCGCGAAATATTCTTGGGCCTCTTTATTACTTGAAGTACCC 1958 Query 65575 AGACCTTTATAATATTTGATTTTCCAA 65601 |||||||| || ||||| ||||||||| Sbjct 1957 AGACCTTTGTAGTATTTTATTTTCCAA 1931 >seq21214 Length=4367 Score = 100 bits (110), Expect = 1e-16 Identities = 157/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 65086 TCGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATT 65145 || ||| ||||| || || | || | ||||||||| ||||| |||||||| | | ||| Sbjct 1904 TCTTGTACCAAATTGGCCTATAGGTAATAATAAATTTATATTATTTGAACCTACATAATC 1963 Query 65146 CTGAGCCATTCCGATAATTGCTGCATTTAAACTCGCTTCACCGTGATGATATCCTGAATG 65205 |||||| | | | |||| | | |||| ||| |||||||||||| ||| Sbjct 1964 CTGAGCTAAAGCTGTTATTGTTTGAGATAAAGAAATTTCGCCGTGATGATATGATGATAC 2023 Query 65206 TTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTCCGTTGTTAAATTCTTTTTAAA 65265 |||| ||||||||| ||| |||||| ||||||||||| | |||||| ||||||| Sbjct 2024 TTCACTTACATATCCAGTAAGTTGAGCTACTTTTATTTCAGAACGTAAATTTCTTTTAAA 2083 Query 65266 TGCAGAATACAATATTTTCCGTAAACTAATTTTCAATCCATCCAT 65310 | | | |||||||| | | ||| ||| || || ||||| Sbjct 2084 GCAACCAAATAATATTTTTCTTTCACTCGGTTTTAAACCGTCCAT 2128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235572186342750