Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Entodinium_20caudatum_20[genbank_20GCA_5F002087855.1_202017-04-12]
37,535 sequences; 81,718,944 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq33152 98.7 6e-16
>seq33152
Length=3236
Score = 98.7 bits (108), Expect = 6e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| |||||||| | | || || || ||||| |||||||| ||||| ||||| | |
Sbjct 2904 CCACCTCTAAGTCTGAGGACTAAGTGAAGAGTTGATTCCTTTTGGATGTTGTAATCGGCA 2845
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| |||| | ||| || | |||||||||||| || ||||| | ||||| || || ||
Sbjct 2844 AGAGTTCTGTTGTCCTCTAATTGTTTACCGGCGAAGATTAATCTTTGTTGATCTGGTGGG 2785
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658
| || || |||||| ||| ||| | ||||||| | || ||||| || ||
Sbjct 2784 ATACCTTCTTTGTCTTGGAT-TTTGGCTTTAACGTTTTCGATGGTGTCAGAAGGTTCAAC 2726
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| | ||| || ||||||||||| | ||||| || || || |||||
Sbjct 2725 ATCTAAGGTGATAGTTTTACCGGTGAGAGTTTTGACGAAGATTTGCAT 2678
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| |||||||| | | || ||||| ||||| |||||||| ||||| ||||| |
Sbjct 3132 CCACCTCTAAGTCTGAGGACTAAATGAAGAGTTGATTCCTTTTGGATGTTGTAATCGGCT 3073
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
| |||| | ||| || | |||||||||||| || ||||| | |||||| || || ||
Sbjct 3072 AAGGTTCTGTTGTCCTCTAATTGTTTACCGGCGAAGATTAATCTCTGTTGATCTGGTGGG 3013
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658
| || || |||||| ||| ||||| |||||| | ||| || || || ||
Sbjct 3012 ATACCTTCTTTGTCTTGGAT-TTTTGCCTTAACGTTTTCAATGGTATCAGAAGGTTCAAC 2954
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| | ||| || |||||||| || | ||||| || || || |||||
Sbjct 2953 ATCTAAGGTGATAGTTTTACCAGTAAGGGTTTTGACGAAGATTTGCAT 2906
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314585624485655
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |