Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entodinium_20caudatum_20[genbank_20GCA_5F002087855.1_202017-04-12] 37,535 sequences; 81,718,944 total letters Query= NC_029073.1 Length=141298 Score E Sequences producing significant alignments: (Bits) Value seq9164 178 1e-39 >seq9164 Length=1736 Score = 178 bits (196), Expect = 1e-39 Identities = 374/553 (68%), Gaps = 6/553 (1%) Strand=Plus/Plus Query 48711 TTGAATAGCCTCTTTGACTTC--ATTTGCATTTCCCACTTCATATCCTAATGGCTGATTC 48768 || |||| | ||||| | ||| | || |||||| || | | ||||| || |||||| Sbjct 751 TTCAATAACTTCTTTTATTTCTAAATT--ATTTCCTACAGCTTTGCCTAAAGGTTGATTC 808 Query 48769 ATATCTGTAATGACTGCAATTGTTTTTCGATTCAGATTTTTTCCAATATCAACCATTTCT 48828 ||||| || || | || || ||| || | | ||| ||||||| |||||||||| Sbjct 809 ATATCGGTGATTTCAGCTTTTACATTTTTTTTTAATTGTTTACCAATATTAACCATTTCT 868 Query 48829 TGTGCTAATGCTTTAGAGTCTTC-TAATGTTTTCATAAATGCTCCATTTCCTGTTTTAAC 48887 |||||| ||| | ||||| |||| |||||||||| ||||| ||||| ||| || Sbjct 869 ATGGCTAATTTTTTTGCATCTTCATAAT-TTTTCATAAAAGCTCCTTTTCCACATTTGAC 927 Query 48888 ATCTAATACAATTGCATCTGCTCCCATTGCGAtttttttACTCATAATGCTACTAGCAAT 48947 ||| | || ||| || || || || | ||||||| ||| || | |||||| Sbjct 928 ATCGAGTAAAATACAGTCAGCACCAGAGGCCAATTTTTTAGACATTATAGAAGAAGCAAT 987 Query 48948 TAATGGAATTGAATTAACTGTTCCAGTAACATCGCGTAATGCATATAATTTTTTGTCGGC 49007 ||| || || || | |||||||||||||| || | |||| |||||| | |||| || || Sbjct 988 TAAAGGTATAGATTGCACTGTTCCAGTAACGTCTCTTAATTCATATAGTCTTTTATCAGC 1047 Query 49008 AGGCACTAAAATTCCACTTTGTCCAACTAATGCGATTTTATGTGTATTAACTTGATTAAT 49067 || ||| | | | ||| |||| | ||| | | | | | ||||| || | Sbjct 1048 TGGATCTATATTCTTATCTTGGCCAATGATTGCAACTCCAATTTCCCTTACTTGTTTTTT 1107 Query 49068 AAATTGTTCTCTTGTTAATTCTACGTTAAAGCCTTGTATAGATTCTAATTTGTCAATTGT 49127 |||| || | ||||| | || | | || | || ||||| | || || | || Sbjct 1108 GAATTCCTCCTTCGTTAAATTTATTCTCATTCCCGGAATTGATTCCATCTTATCCAAGGT 1167 Query 49128 TCCTCCTGTGTGCCCTAAACCTCTACCTGACATTTTAGCAACAGGAATACCCAAAGAAGC 49187 |||||| || || ||||||||||| || |||||| || | | ||| | ||||| Sbjct 1168 TCCTCCAGTATGTCCTAAACCTCTTCCACTCATTTTTGCCATTTTAGCACCGCATGAAGC 1227 Query 49188 AACCAATGGAGCAACGATTAAACTAATTTTATCGCCGACTCCACCTGTGGAATGTTTATC 49247 ||||| || | | |||||| | |||||| |||||||| ||||| ||||| ||||| Sbjct 1228 TACCAAAGGTCCCAAAATTAAAGAGACTTTATCACCGACTCCTCCTGTTGAATGCTTATC 1287 Query 49248 TACTTTTACACCT 49260 | ||||| |||| Sbjct 1288 AATTTTTAAACCT 1300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451813515238800