Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entodinium_20caudatum_20[genbank_20GCA_5F002087855.1_202017-04-12] 37,535 sequences; 81,718,944 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq33152 100 2e-16 seq22541 96.9 2e-15 seq18875 89.7 4e-13 seq17428 86.0 4e-12 >seq33152 Length=3236 Score = 100 bits (110), Expect = 2e-16 Identities = 141/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || |||||||| ||||| ||||| || ||||| ||| ||| || | ||||| ||| Sbjct 2447 AACATGCAAATATTTGTCAAAACCCTCACTGGTAAAACTATCACTTTAGATGTTGAACCT 2506 Query 27847 ACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | ||| || | ||| |||||| ||||| |||||||||||| |||| | Sbjct 2507 TCTGACACCATCGAGAAT--GTCAAAGCCAAAATCCAAGACAAAGAAGGTATTCCTCCAG 2564 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||| | ||||| || ||||| |||||||| || ||| | | | ||| |||||| Sbjct 2565 ATCAACAAAGATTAATCTTCGCCGGTAAACAATTAGAGGACAACAGAACCTTAGCCGATT 2624 Query 27965 ACAACATCCAAAAAGA 27980 ||||||||||||| || Sbjct 2625 ACAACATCCAAAAGGA 2640 >seq22541 Length=1059 Score = 96.9 bits (106), Expect = 2e-15 Identities = 140/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 ||||||||||| ||||| |||||||||||||| || |||||| | ||||| ||| Sbjct 902 AAAATGCAAATATTTGTTAAAACTCTTACTGGAAAGACAATTACACTCGATGTTGAACCT 843 Query 27847 ACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | ||| || | ||| |||||| || || |||||||||||| |||| | Sbjct 842 TCTGACACCATTGAAAAT--GTCAAAGCCAAGATCCAAGACAAAGAAGGTATTCCTCCAG 785 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||| | ||||| || || ||||||||||| || ||| | | | | | |||| Sbjct 784 ATCAACAAAGATTAATCTTCGCAGGAAAACAATTAGAGGACAATAGAACACTCGCTGATT 725 Query 27965 ACAACATCCAAAAAGA 27980 |||| ||||||||||| Sbjct 724 ACAATATCCAAAAAGA 709 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| |||||| | || || ||| || || ||||||| ||| | Sbjct 443 ATGCAAATCTTTGTCAAAACTTTGACCGGAAAAACCATCACCCTTGATGTTGAACCTTCT 384 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | | || |||||| || || |||||||||||| |||| || || Sbjct 383 GACACTATCGAAAATGTCAAAGCCAAGATCCAAGACAAAGAAGGTATTCCTCCAGATCAA 324 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCT-TGTCCGATTACAA 27968 ||| | ||||| || || ||||||||||| || ||| ||| | || | | |||||||| Sbjct 323 CAAAGATTAATCTTCGCAGGAAAACAATTAGAAGAC-AACAGAACTCTCGCTGATTACAA 265 Query 27969 CATCCAAAAAGA 27980 ||||||||| || Sbjct 264 CATCCAAAAGGA 253 >seq18875 Length=1247 Score = 89.7 bits (98), Expect = 4e-13 Identities = 139/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || |||||| | ||||| ||| || || | ||||| ||| | Sbjct 397 ATGCAAATCTTCGTCAAAACTTTGACTGGAAAAACCATCACTCTCGATGTTGAACCTTCT 456 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| |||||| |||||| |||||||||||| |||| || | Sbjct 457 GACACCATCGAAAAT--GTCAAAGCCAAAATACAAGACAAAGAAGGTATTCCTCCAGATC 514 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTAC 27966 | ||| | ||||| || |||||||||||| | || ||| | | | |||| |||||||| Sbjct 515 AACAAAGATTAATCTTCGCCGGAAAACAACTTGAGGACAATAGAACTCTTG-CCGATTAC 573 Query 27967 AACATCCAAAAAGA 27980 || ||||||||||| Sbjct 574 AATATCCAAAAAGA 587 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 ||||||||||| || || |||||||||||||| || || || ||||||| ||| Sbjct 166 AAAATGCAAATATTCGTCAAAACTCTTACTGGAAAGACCATCACTCTTGATGTAGAACCT 225 Query 27847 ACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | ||| | || |||||| || || |||||||||||| |||| || Sbjct 226 TCTGACACCATTGAAAACGTCAAAGCCAAGATCCAAGACAAAGAAGGTATTCCTCCAGAT 285 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || ||| | ||||| || || ||||||||||| || ||| | | | | | |||||| Sbjct 286 CAACAAAGATTAATCTTCGCAGGAAAACAATTAGAGGACAACAGAACACTCGCTGATTAC 345 Query 27967 AACATCCAAAAAGA 27980 ||||||||||| || Sbjct 346 AACATCCAAAAGGA 359 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || |||||| | ||||| ||| || || ||||||| ||| | Sbjct 625 ATGCAAATCTTCGTCAAAACTTTGACTGGAAAAACCATCACTCTTGATGTTGAACCTTCT 684 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 || | | || |||||| || || |||||||||||| |||| || || Sbjct 685 GATACTATTGAAAACGTCAAAGCCAAGATCCAAGACAAAGAAGGTATTCCTCCAGATCAA 744 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||| | ||||| ||||| ||||||||||| || ||| | | | | | ||||||||| Sbjct 745 CAAAGATTAATCTTTGCAGGAAAACAATTAGAGGACAATAGAACACTCGCTGATTACAAC 804 Query 27970 ATCCAAAAAGA 27980 ||||||||||| Sbjct 805 ATCCAAAAAGA 815 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || |||||| | ||||| ||| || || ||||||| ||| | Sbjct 853 ATGCAAATCTTCGTCAAAACTTTGACTGGAAAAACCATCACTCTTGATGTTGAACCTTCT 912 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | || |||||| || || |||||||||||| |||| || || Sbjct 913 GACACCATTGAAAACGTCAAAGCCAAGATCCAAGACAAAGAAGGTATTCCTCCAGATCAA 972 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCT-TGTCCGATTACAA 27968 ||| | |||||||| || ||||||||||| || ||| ||| | || | | || ||||| Sbjct 973 CAAAGATTAATTTTCGCAGGAAAACAATTAGAGGAC-AACAGAACTCTCGCTGACTACAA 1031 Query 27969 CATCCAAAAAGA 27980 |||||||||||| Sbjct 1032 CATCCAAAAAGA 1043 >seq17428 Length=1321 Score = 86.0 bits (94), Expect = 4e-12 Identities = 140/197 (71%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 ||||||||||| ||||| ||||| || || || ||| || || | ||||| ||| Sbjct 1169 AAAATGCAAATATTTGTTAAAACACTCACAGGAAAAACCATCACTCTCGATGTAGAACCT 1110 Query 27847 ACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | ||| || | ||| |||||| ||| || |||||||||||| |||| | Sbjct 1109 TCTGACACCATTGAAAAT--GTCAAAGCAAAGATCCAAGACAAAGAAGGTATTCCTCCAG 1052 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGAT 27963 | || ||| | ||||| || || ||||||||||| || ||| | | | |||| | ||| Sbjct 1051 ATCAACAAAGATTAATCTTCGCAGGAAAACAATTAGAGGACAACAGAACTCTTG-CTGAT 993 Query 27964 TACAACATCCAAAAAGA 27980 |||||||||||||| || Sbjct 992 TACAACATCCAAAAGGA 976 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || |||||| | ||||| ||| || || | ||||| ||| | Sbjct 710 ATGCAAATTTTCGTCAAAACTTTGACTGGAAAAACCATCACTCTCGATGTTGAACCTTCT 651 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| |||||| ||||| |||||||||||| |||| || | Sbjct 650 GACACCATTGAAAAT--GTCAAAGCCAAAATCCAAGACAAAGAAGGTATTCCTCCAGATC 593 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||| | ||||| || || ||||||||||| || ||| | | | | | ||||||| Sbjct 592 AACAAAGATTAATCTTCGCAGGAAAACAATTAGAGGACAATAGAACACTCGCTGATTACA 533 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 | ||||||||||| ||| | || ||||| Sbjct 532 ATATCCAAAAAGAATCAACTCTTCACTTGGT 502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355699607964945