Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entodinium_20caudatum_20[genbank_20GCA_5F002087855.1_202017-04-12] 37,535 sequences; 81,718,944 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq21031 104 2e-17 seq28493 95.1 1e-14 seq17428 87.8 1e-12 seq23954 86.0 5e-12 seq34614 82.4 6e-11 >seq21031 Length=1135 Score = 104 bits (114), Expect = 2e-17 Identities = 101/129 (78%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 100992 TAATACAGTTATTACTATTGCCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTT 101051 ||||| | || ||| || || |||| || |||||||| | |||||||| ||||||| Sbjct 72 TAATATAATTTTTATTAA--CCTCCTCTTAACCTTAACACTAAATGCAAAGTCGATTCTT 129 Query 101052 TTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAA 101111 |||||||||| ||||| || | |||| | ||||||||||||||| || ||| | |||| Sbjct 130 TTTGAATATTATAATCAGCAAAAGTTCCGTTATCTTCCAATTGTTTTCCTGCAAAAATAA 189 Query 101112 GCCTTTGTT 101120 | ||||||| Sbjct 190 GTCTTTGTT 198 >seq28493 Length=728 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 101041 AGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGTTTGCC 101100 ||||||||||||||| ||||| ||||| || | |||| | |||||||| || ||| || Sbjct 585 AGTTGATTCTTTTTGGATATTATAATCAGCTAAAGTTCTATGATCTTCCATTTCTTTACC 526 Query 101101 CGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTT 101160 ||| | ||||| |||||||| |||| || | | |||||| || ||||||| ||| Sbjct 525 AGCAAAAATAAGTCTTTGTTGATCTATAGGAATTCTTTCTTTTTCTTGAATTTTTGATTT 466 Query 101161 CACAT 101165 ||||| Sbjct 465 CACAT 461 >seq17428 Length=1321 Score = 87.8 bits (96), Expect = 1e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 101008 ATTGCCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATC 101067 ||| || |||| | ||||| |||| ||| | ||||||||||||||| || ||||| || Sbjct 252 ATTTCCACCTCTAAGTCTTAGGACCAAGTGAAGAGTTGATTCTTTTTGGATGTTGTAGTC 311 Query 101068 GGCCATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTAC 101127 || | |||| || ||||| |||||||| || || | || | |||||||| ||| Sbjct 312 AGCGAGAGTTCTGTTGTCTTCTAATTGTTTTCCTGCGAAGATTAATCTTTGTTGATCTGG 371 Query 101128 GGGCACGCCTTCTTTGTC 101145 || | ||||||||||| Sbjct 372 AGGAATACCTTCTTTGTC 389 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| | ||| | || | ||| | ||||||||| ||||| || |||||||| || Sbjct 940 CCACCTCTAAGTCTGAGGACTAAGTGAAGAGTTGATTCCTTTTGGATGTTGTAATCAGCA 999 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | |||| || || || |||||||| || || | || | |||||||| ||| || Sbjct 1000 AGAGTTCTGTTGTCCTCTAATTGTTTTCCTGCGAAGATTAATCTTTGTTGATCTGGAGGA 1059 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGT- 101190 | ||||||||||| || ||| ||| |||| | | || || | | ||| | Sbjct 1060 ATACCTTCTTTGTCTTGGATCTTTGCTTTGACATTTTCAATGGTGTC--AGAAGGTTCTA 1117 Query 101191 -TTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCATTATT 101242 |||| || || ||||| || || | |||||||| ||| ||||||||| || Sbjct 1118 CATCGAGAGTGATGGTTTTTCCTGTGAGTGTTTTAACAAATATTTGCATTTTT 1170 >seq23954 Length=989 Score = 86.0 bits (94), Expect = 5e-12 Identities = 105/142 (74%), Gaps = 1/142 (1%) Strand=Plus/Minus Query 101002 ATTACTATTG-CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATAT 101060 |||| |||| || |||| | ||||| || | ||||||||||||||||| ||||||| Sbjct 983 ATTATTATTTTCCTCCTCTAAGCCTTAAAACTAAATGCAAAGTTGATTCTTTCTGAATAT 924 Query 101061 TGTAATCGGCCATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTT 101120 | ||||| | |||| | ||||| |||||||| |||||| | || | ||||||| Sbjct 923 TATAATCATTAAAAGTTCTATTCTCTTCTAATTGTTTTCCCGCAAAAATTAATCTTTGTT 864 Query 101121 GGTCTACGGGCACGCCTTCTTT 101142 |||| | ||| | ||||| || Sbjct 863 GGTCCAGGGGAATACCTTCCTT 842 >seq34614 Length=2945 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 ||||||| |||||||| |||| || ||||| | |||||| |||||||||||| | Sbjct 585 CCGCCTCTTAATCTTAAAACCAAATGTAAAGTACTTCCTTTTTTAATATTGTAATCAATC 644 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTC 101124 | |||| | |||||| |||||||| || ||| | || | ||||||||||| Sbjct 645 AAAGTTCTATTATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTC 697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409473397466565