Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entodinium_20caudatum_20[genbank_20GCA_5F002087855.1_202017-04-12] 37,535 sequences; 81,718,944 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq22541 167 5e-36 seq18875 163 6e-35 seq17428 163 6e-35 seq33152 143 6e-29 seq11534 86.0 1e-11 >seq22541 Length=1059 Score = 167 bits (184), Expect = 5e-36 Identities = 152/192 (79%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 |||||||||||| ||||| || ||||| || | |||||| |||||||| || || || Sbjct 480 TTCTTTTTGGATATTGTAATCGGCAAGAGTTCTATTATCCTCAAGTTGTTTTCCTGCGAA 539 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 ||| || | |||||| || |||||||| || |||||||||||||| ||||| || | Sbjct 540 GATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGGATCTTGGCTTTGACATT 599 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 ||||||||||| |||| ||| || ||||||||||| || || || |||||||| || || Sbjct 600 TTCGATAGTGTCAGAAGGTTCAACATCGAGAGTGATGGTTTTTCCGGTCAAAGTTTTGAC 659 Query 283088 GAATATCTGCAT 283099 ||| || ||||| Sbjct 660 GAAGATTTGCAT 671 Score = 149 bits (164), Expect = 1e-30 Identities = 148/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| |||||||||||||| ||||| || || | | || |||| |||||| || || || Sbjct 252 TTCCTTTTGGATGTTGTAATCAGCGAGAGTTCTGTTGTCTTCTAATTGTTTTCCTGCGAA 311 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 ||| || | |||||| || |||||||| || |||||||||||||| ||||| || | Sbjct 312 GATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGGATCTTGGCTTTGACATT 371 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 ||||||||||| |||| ||| || || || ||||| || || || |||||||| || || Sbjct 372 TTCGATAGTGTCAGAAGGTTCAACATCAAGGGTGATGGTTTTTCCGGTCAAAGTTTTGAC 431 Query 283088 GAATATCTGCAT 283099 || || ||||| Sbjct 432 AAAGATTTGCAT 443 Score = 149 bits (164), Expect = 1e-30 Identities = 150/195 (77%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 |||||||||||| ||||| ||||| || || | ||||||| |||||| || || || Sbjct 708 TTCTTTTTGGATATTGTAATCAGCGAGTGTTCTATTGTCCTCTAATTGTTTTCCTGCGAA 767 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 ||| || | |||||| || |||||||| || |||||||||||||| ||||| || | Sbjct 768 GATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGGATCTTGGCTTTGACATT 827 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || ||||| |||| ||| || ||||| || || ||||| || || | ||| ||||| Sbjct 828 TTCAATGGTGTCAGAAGGTTCAACATCGAGTGTAATTGTCTTTCCAGTAAGAGTTTTAAC 887 Query 283088 GAATATCTGCATTTT 283102 ||||| |||||||| Sbjct 888 AAATATTTGCATTTT 902 >seq18875 Length=1247 Score = 163 bits (180), Expect = 6e-35 Identities = 153/195 (78%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| |||||||||||||| ||||| || || | | ||||||| |||||| || || || Sbjct 360 TTCCTTTTGGATGTTGTAATCAGCGAGTGTTCTGTTGTCCTCTAATTGTTTTCCTGCGAA 301 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 ||| || | |||||| || |||||||| || |||||||||||||| ||||| ||| | Sbjct 300 GATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGGATCTTGGCTTTGACGTT 241 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || ||||| |||| ||| || || |||||||| ||||| || || | ||| || || Sbjct 240 TTCAATGGTGTCAGAAGGTTCTACATCAAGAGTGATGGTCTTTCCAGTAAGAGTTTTGAC 181 Query 283088 GAATATCTGCATTTT 283102 |||||| |||||||| Sbjct 180 GAATATTTGCATTTT 166 Score = 161 bits (178), Expect = 2e-34 Identities = 151/192 (79%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 |||||||||||||||||| ||||| || || | ||||||| |||||| || ||||| Sbjct 816 TTCTTTTTGGATGTTGTAATCAGCGAGTGTTCTATTGTCCTCTAATTGTTTTCCTGCAAA 757 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 ||| || | |||||| || |||||||| || |||||||||||||| ||||| ||| | Sbjct 756 GATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGGATCTTGGCTTTGACGTT 697 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || ||||| || |||| ||| || || |||||||| || || || |||||||| || || Sbjct 696 TTCAATAGTATCAGAAGGTTCAACATCAAGAGTGATGGTTTTTCCAGTCAAAGTTTTGAC 637 Query 283088 GAATATCTGCAT 283099 ||| || ||||| Sbjct 636 GAAGATTTGCAT 625 Score = 161 bits (178), Expect = 2e-34 Identities = 151/192 (79%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 |||||||||||||||||||||||| || || | | ||||||| |||||| || || || Sbjct 1044 TTCTTTTTGGATGTTGTAGTCAGCGAGAGTTCTGTTGTCCTCTAATTGTTTTCCTGCGAA 985 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 || || | |||||| || |||||||| || |||||||||||||| ||||| ||| | Sbjct 984 AATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGGATCTTGGCTTTGACGTT 925 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || ||||| |||| ||| || || |||||||| || || || |||||||| || || Sbjct 924 TTCAATGGTGTCAGAAGGTTCAACATCAAGAGTGATGGTTTTTCCAGTCAAAGTTTTGAC 865 Query 283088 GAATATCTGCAT 283099 ||| || ||||| Sbjct 864 GAAGATTTGCAT 853 Score = 152 bits (168), Expect = 1e-31 Identities = 149/192 (78%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 |||||||||||| ||||| || ||||| || | ||||| |||||||| ||||| || Sbjct 588 TTCTTTTTGGATATTGTAATCGGCAAGAGTTCTATTGTCCTCAAGTTGTTTTCCGGCGAA 529 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 ||| || | |||||| || |||||||| || |||||||| || || ||||| || | Sbjct 528 GATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGTATTTTGGCTTTGACATT 469 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 ||||| ||||| |||| ||| || ||||||||||| || || || |||||||| || || Sbjct 468 TTCGATGGTGTCAGAAGGTTCAACATCGAGAGTGATGGTTTTTCCAGTCAAAGTTTTGAC 409 Query 283088 GAATATCTGCAT 283099 ||| || ||||| Sbjct 408 GAAGATTTGCAT 397 >seq17428 Length=1321 Score = 163 bits (180), Expect = 6e-35 Identities = 153/195 (78%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| |||||||||||||| |||||||| || | | ||||||| |||||| || || || Sbjct 975 TTCCTTTTGGATGTTGTAATCAGCAAGAGTTCTGTTGTCCTCTAATTGTTTTCCTGCGAA 1034 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 ||| || | |||||| || |||||||| || |||||||||||||||||||| || | Sbjct 1035 GATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGGATCTTTGCTTTGACATT 1094 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || ||||| |||| ||| || ||||||||||| || || || || | || ||||| Sbjct 1095 TTCAATGGTGTCAGAAGGTTCTACATCGAGAGTGATGGTTTTTCCTGTGAGTGTTTTAAC 1154 Query 283088 GAATATCTGCATTTT 283102 ||||| |||||||| Sbjct 1155 AAATATTTGCATTTT 1169 Score = 161 bits (178), Expect = 2e-34 Identities = 151/192 (79%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 |||||||||||||||||||||||| || || | | || |||| |||||| || || || Sbjct 291 TTCTTTTTGGATGTTGTAGTCAGCGAGAGTTCTGTTGTCTTCTAATTGTTTTCCTGCGAA 350 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 ||| || | |||||| || |||||||| || |||||||||||||| ||||| ||| | Sbjct 351 GATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGGATCTTGGCTTTGACGTT 410 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || ||||| |||| ||| || || |||||||| || || || |||||||| || || Sbjct 411 TTCAATGGTGTCAGAAGGTTCAACGTCAAGAGTGATGGTTTTTCCAGTCAAAGTTTTGAC 470 Query 283088 GAATATCTGCAT 283099 ||| || ||||| Sbjct 471 GAAGATTTGCAT 482 Score = 149 bits (164), Expect = 1e-30 Identities = 148/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 |||||||||||| ||||| ||||| || || | ||||||| |||||| || || || Sbjct 519 TTCTTTTTGGATATTGTAATCAGCGAGTGTTCTATTGTCCTCTAATTGTTTTCCTGCGAA 578 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 ||| || | |||||| || |||||||| || ||||||||||| || ||||| || | Sbjct 579 GATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGGATTTTGGCTTTGACATT 638 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || ||||| |||| ||| || ||||||||||| || || || |||||||| || || Sbjct 639 TTCAATGGTGTCAGAAGGTTCAACATCGAGAGTGATGGTTTTTCCAGTCAAAGTTTTGAC 698 Query 283088 GAATATCTGCAT 283099 ||| || ||||| Sbjct 699 GAAAATTTGCAT 710 >seq33152 Length=3236 Score = 143 bits (158), Expect = 6e-29 Identities = 147/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| |||||||||||||| || ||||| || | | ||||||| |||||| ||||| || Sbjct 2869 TTCCTTTTGGATGTTGTAATCGGCAAGAGTTCTGTTGTCCTCTAATTGTTTACCGGCGAA 2810 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 ||| || | |||||| || || ||||| || ||||||||||| || ||||| ||| | Sbjct 2809 GATTAATCTTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGGATTTTGGCTTTAACGTT 2750 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 ||||| ||||| |||| ||| || || | ||||| || ||||| || | ||| || || Sbjct 2749 TTCGATGGTGTCAGAAGGTTCAACATCTAAGGTGATAGTTTTACCGGTGAGAGTTTTGAC 2690 Query 283088 GAATATCTGCAT 283099 ||| || ||||| Sbjct 2689 GAAGATTTGCAT 2678 Score = 136 bits (150), Expect = 8e-27 Identities = 147/195 (75%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| |||||||||||||| || || | || | | ||||||| |||||| ||||| || Sbjct 2641 TTCCTTTTGGATGTTGTAATCGGCTAAGGTTCTGTTGTCCTCTAATTGTTTACCGGCGAA 2582 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 ||| || | |||||| || |||||||| || ||||||||||| || ||||| || | Sbjct 2581 GATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGGATTTTGGCTTTGACATT 2522 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 ||||| ||||| |||| ||| || || | |||||| || ||||| || | || || || Sbjct 2521 CTCGATGGTGTCAGAAGGTTCAACATCTAAAGTGATAGTTTTACCAGTGAGGGTTTTGAC 2462 Query 283088 GAATATCTGCATTTT 283102 ||||| ||||| || Sbjct 2461 AAATATTTGCATGTT 2447 Score = 116 bits (128), Expect = 8e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| |||||||||||||| || || | || | | ||||||| |||||| ||||| || Sbjct 3097 TTCCTTTTGGATGTTGTAATCGGCTAAGGTTCTGTTGTCCTCTAATTGTTTACCGGCGAA 3038 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 ||| || | ||||| || || ||||| || ||||||||||| ||||| || ||| | Sbjct 3037 GATTAATCTCTGTTGATCTGGTGGGATACCTTCTTTGTCTTGGATTTTTGCCTTAACGTT 2978 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || || || |||| ||| || || | ||||| || ||||| || | || || || Sbjct 2977 TTCAATGGTATCAGAAGGTTCAACATCTAAGGTGATAGTTTTACCAGTAAGGGTTTTGAC 2918 Query 283088 GAATATCTGCAT 283099 ||| || ||||| Sbjct 2917 GAAGATTTGCAT 2906 >seq11534 Length=1609 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||||||||| ||||||||||||||||| |||||| ||||||||| ||| Sbjct 1531 TAGTATAGTGGTTAGTATACCTGCCTGTCACGCAGGTGACCGGAGTTCAATTCTCCG 1587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046235805127890