Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entodinium_20caudatum_20[genbank_20GCA_5F002087855.1_202017-04-12] 37,535 sequences; 81,718,944 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq36279 116 5e-21 seq19433 104 3e-17 >seq36279 Length=2667 Score = 116 bits (128), Expect = 5e-21 Identities = 383/592 (65%), Gaps = 29/592 (5%) Strand=Plus/Minus Query 155872 TTAAA-ATTTGAAGACGCCCCTTTTCATCGGGTAATCCAATTTCTATCTTCAATTCCAAC 155930 ||||| ||||| | ||| || |||||||| || | | | |||||| | ||||| || Sbjct 1156 TTAAATATTTGTAAACGGCCTTTTTCATCAGGAAGTGATACTTCTATATGTAATTCTAAT 1097 Query 155931 CGCCCAGGTCTTAATAATGCTTCGTCAATTAAGTCGGGTCTGTTGGTCATACCTATGATT 155990 | |||||||||||| | ||||| || ||||| || || || ||||||||||| | | Sbjct 1096 CTCCCAGGTCTTAAAATGGCTTCATCTATTAAATCTTTCCTATTAGTCATACCTATAACT 1037 Query 155991 AAAATGTTGTTTAAAGATTCTACACCGTCTATTTTAGACAATAATTGATTGACTACGGCG 156050 | ||| | |||||||| || ||||| || ||||||| ||||||||||| || | | Sbjct 1036 ATAATATCATTTAAAGAATCGACACCATCAATTTTAGTTAATAATTGATTTACAGCAGAA 977 Query 156051 TC----------GTGCGTGGCGT--TATCACCGCGTTTTTTACACAGAGCATCTATTTCA 156098 || || | || || | ||| | | |||||| | || ||| |||||| Sbjct 976 TCATTAACTCCAGTTCCTGAAGTCACAGTACCTCTTGCTTTACATATAGAATCAATTTCA 917 Query 156099 TCGAAGACGATAACGTGTAATCC-GCTGGCTAAACCCAATTT--NNNNNNNNNNNNNNNA 156155 || ||||| || || || || || ||| | | | | |||| | Sbjct 916 TCAAAGACTATTACATGCAAACCAGCT---TCATCTCCATTTTCTTTTTGATCTTTCTCA 860 Query 156156 GCCTCTTGAAACAATCGTCTGACGTTAGCTTCCGATTCACCCACATATTTGTTTAATAAT 156215 || | ||| || || | || ||||| ||| || ||| |||| | |||||| Sbjct 859 GCATTGGCAAATAAATCCCTTATTTTTCTTTCCGTTTCTCCAACAAATTTATCAAATAAT 800 Query 156216 TCAGGACCGTTAACTATTTTGA---CGGGTCGTGATTTAAAAGCTTGAGCGATACAGCGA 156272 || ||||| || || | ||| | | | | |||| ||||| | ||| | | | Sbjct 799 TCTGGACCATTTACGACTTTAAATTCAG--CAACATTT-AAAGCATTAGCTAAAGTTCTG 743 Query 156273 GCCATTAATGTTTTACCGCACCCAGGAGGTCCGTATAACAATACTCCTTTTATATGTTTA 156332 || |||| |||||||| || || || || ||||| || | ||||||| ||| | | Sbjct 742 GCTATTAGGGTTTTACCAGTACCTGGTGGGCCATATAATAAAATACCTTTTACATGATGA 683 Query 156333 CAACCTAATTTTTC--AGTTATTTCTACCGGAACTGATCTGGAAGCAAATGCTCTTCGAA 156390 ||| ||||||| | | | || ||| | |||| | ||| ||||||| || Sbjct 682 ATACCATATTTTTCTAAATAAGCAGTA--GGATACAACCTGGTTGTAAAGGCTCTTCTAA 625 Query 156391 AAATGAGAGAAAATTCTTTATCCAATCCCCCCACACCCATTTCCTCAAAATT 156442 | ||| ||| | |||| ||| || || || ||||||||||| | |||||| Sbjct 624 ATATGGTAGATATTTCTCCATCTAAACCACCAACACCCATTTCATTAAAATT 573 >seq19433 Length=9611 Score = 104 bits (114), Expect = 3e-17 Identities = 130/176 (74%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 63720 TAAAATAAAATTAAGATCTTCTAAAATACCAGAAATAGGTGATAAATTTGCTTCTTTTAC 63779 |||| |||||| ||| || | ||| || |||||||||||||||||||||| || Sbjct 9093 TAAAGTAAAATGTAGAACTATAAGAATTCCTCAAATAGGTGATAAATTTGCTTCAAG-AC 9035 Query 63780 A-GCTCAAAAAGGTACGTGTGGTATGATTTATCGACAAGAAGATATGCCTTTTACCAAAG 63838 | | |||||||| || ||||||| ||||||||| |||||||||||||||| | | Sbjct 9034 ATGGCCAAAAAGGAACAATAGGTATGACTTATCGACAGGAAGATATGCCTTTTAATATCG 8975 Query 63839 ACGGTATCGTACCCGATCTCGTCATCAATCCACACGCTTTTCCCAGTCGTATGACC 63894 | || || ||| ||| | | || ||||| || ||| |||| || || |||||| Sbjct 8974 AGGGAATAACACCTGATATTATTATAAATCCTCATGCTATTCCAAGCCGAATGACC 8919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 666762216654600