Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq64606 150 4e-31 seq59179 116 8e-21 seq89819 100 6e-16 seq12128 100 6e-16 seq73622 86.0 1e-11 seq96370 84.2 5e-11 >seq64606 Length=2588 Score = 150 bits (166), Expect = 4e-31 Identities = 293/429 (68%), Gaps = 8/429 (2%) Strand=Plus/Plus Query 61082 AATTTGTCAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGA 61141 ||| | |||||| || || |||||||| | || |||||||||||| | |||| || Sbjct 1909 AATATTTCAAGCCTCGACCTCTGAACTTTTCGGTAAAGTTCAAGAAGAACGGCAAAATGA 1968 Query 61142 AAGGACTCCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTGGAT 61201 || || || ||| |||| || || |||||||| ||||| ||||| |||| | ||||| Sbjct 1969 AAACACACCCTTTCATCCGCGGAGTCCGTATGGAGTTGCGAAACTTTACGGCTTTTGGAT 2028 Query 61202 TTGTAAAAATTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCGATTTGTTTCAATCA 61261 ||||||| || ||||||| ||||| || || |||| ||||| || Sbjct 2029 CATGCGAAATTACAAAGAAGCGTATGGCATGTTCAACTGCAATGGAATTTTATTCAACCA 2088 Query 61262 CGAGAGTCCCAATAGAGGTCATCAGTTTGTGACTCGTAAAATTACGAAGGCGGTTGCAAA 61321 | ||||| | || || | ||||||||| || ||||| || | ||| ||||| || Sbjct 2089 TGCCAGTCCGAGAAGGGGAGAAACGTTTGTGACGCGGAAAATCACAATGGCCGTTGCCAA 2148 Query 61322 TATTTTTAACGGTGTCGAAAAATGCATGTAT-CTAGGAAACATAGACTCTAAAAGAGATT 61380 |||| | |||| | ||| | || || || || || | ||| | | | || | Sbjct 2149 TATTCATCTCGGT-AAGCAAAGTAAATTAATGCTTGGTAATCTTGACGCAATGCGCGACT 2207 Query 61381 GGGGATATGCGGAAGATTATATCGAGGCTATGTGGTTGATGTTGCAACAAGATACTCCAG 61440 ||||| | || |||||||| || | | || |||||||||||||||||||| || |||| Sbjct 2208 GGGGACACGCTAAAGATTATGTCTACGGAATTTGGTTGATGTTGCAACAAGAAACCCCAG 2267 Query 61441 ATGACTACGTTATTGCGACTGGACAGACGACG---AGTGTCCGTGAATTCGTAAAAATAG 61497 | || ||||| |||| | | | || || ||| || |||||||| || ||| Sbjct 2268 ACGATTACGTACTTGCATCCG---ATACTTCGCATTCTGTTCGAGAATTCGTCGAATTAG 2324 Query 61498 CGTTCGGTG 61506 |||||| || Sbjct 2325 CGTTCGCTG 2333 >seq59179 Length=18447 Score = 116 bits (128), Expect = 8e-21 Identities = 235/345 (68%), Gaps = 8/345 (2%) Strand=Plus/Minus Query 60891 CACGGAGATTTAACTGATTCAGCTAGTTTGATTAATATAATT-ACCAAGATTCGTCCGGA 60949 || |||||| | ||||| ||| | || || | |||| || | |||| | || || || Sbjct 16996 CATGGAGATATGACTGACTCATCAAGCTTAACACATATTCTTCAACAAG-TGCGCCCCGA 16938 Query 60950 TGAAATCTATAATATGGCTGCTCAAAGTTTTGTGGGAGATAGCTTTCACCAAGCTGAAGT 61009 ||| | |||||| ||||||| |||||| ||||| | | || | | ||||| Sbjct 16937 TGAGGTTTATAATTTGGCTGCACAAAGTCATGTGGCGGTTTCATTCGAAGAGCCTGAATA 16878 Query 61010 GACTGCAAATGTAGACGCTCTTGGTGTTCTGCGTTTGTTAGACGCCGTTCGTATAGCAGG 61069 || || || ||||||||||| |||||||| | || || | || || ||| Sbjct 16877 TACGGCTAACTCTGACGCTCTTGGCACGTTGCGTTTGCTCGAAGCTATCCGAATTCTAGG 16818 Query 61070 TTT----GAACTCTCGAATTTGT--CAAGCATCAACATCTGAACTGTATGGAAAAGTTCA 61123 | ||| || || || | ||||| ||||| |||||| ||||||| || || Sbjct 16817 ACTTGGGGAAACATCAAAATTCTATCAAGCCTCAACCTCTGAATTGTATGGGTTGGTGCA 16758 Query 61124 AGAAATTCCTCAAACAGAAAGGACTCCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAA 61183 ||||| |||||||| |||| || || |||||||| || || || |||| |||||||| Sbjct 16757 AGAAACTCCTCAAAAGGAAACAACACCATTTTATCCGCGCAGTCCCTATGCGGTTGCAAA 16698 Query 61184 ACTATACGCTTACTGGATTTGTAAAAATTACCGCGAGTCGTATGG 61228 | | || || ||||||||| ||||||||||| | ||||| Sbjct 16697 AATGTATGCCTACTGGATTACAGTTAATTACCGCGAAGCCTATGG 16653 >seq89819 Length=605 Score = 100 bits (110), Expect = 6e-16 Identities = 66/72 (92%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||| | Sbjct 220 GCCCGTCTAGCTCAGA-GGTAGAGCGCTAGACTTTTAATCTAGTGGTCGTGGGTTCGATC 278 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 279 CCCACGGTGGGC 290 >seq12128 Length=306 Score = 100 bits (110), Expect = 6e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 61089 CAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAAGGACT 61148 ||||| || || || || || || || ||||| ||||| || ||||||||||||| || Sbjct 15 CAAGCCTCTACTTCGGAGCTTTACGGTAAAGTCCAAGAGATCCCTCAAACAGAAACAACG 74 Query 61149 CCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTGGATTTGTA-A 61207 || ||||| ||||| || |||| ||| |||||| | || ||||| |||| ||||| Sbjct 75 CCTTTTTACCCTCGGTCACCCTATGCTGTGGCAAAAATGTATGCTTATTGGA-TTGTAGT 133 Query 61208 AAATTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCGATTTGTTTCAATCACGAGAG 61267 || || || ||| | |||||||| | | |||||| |||| || || || ||| Sbjct 134 GAACTATCGAGAGGCTTATGGAATTTACGCCTGTAACGGTATTTTGTTTAACCATGAGTC 193 Query 61268 TCCCAATAGAGGTCATCAGTTTGTGACTCGTAAAATTAC 61306 ||| | ||||| | ||||| || || ||||| || Sbjct 194 TCCGCGTCGAGGTGAAACATTTGTAACCCGGAAAATCAC 232 >seq73622 Length=1433 Score = 86.0 bits (94), Expect = 1e-11 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 150650 ATTTTGTAGGTCATAACGGTCGTTTGGGCCACTGAGGTTCGTCGGCATTACTGACACGAA 150709 ||||| || || ||| ||||||||||||| | |||||||| || | ||| | || Sbjct 210 ATTTTCCAGATCGTAATTGTCGTTTGGGCCATATAAATTCGTCGGAATGATTGAAATAAA 151 Query 150710 ATTACAACCGAATTGTTTTCTGTAGGCGTCGCACATTTCGATTCCGGCTATCTTCGCTAT 150769 ||| || ||| |||| | |||||| | || |||| || ||||| || || || || || Sbjct 150 ATTGCAGCCGTATTGATCTCTGTACGATTCACACAATTTAATTCCCGCAATTTTAGCAAT 91 Query 150770 CGCGTATGGTTTGTTAGTAGGTTCGAGAAACCCGGTCATCAGGTATTCTTCTTTGATGGG 150829 || || |||| ||| || || || | | |||| | | ||| |||||| || || || Sbjct 90 GGCATACGGTTCGTTTGTGGGCTCTAAAGCCCCGTTGAGCAGCGCTTCTTCCTTTATTGG 31 Query 150830 GTTTGGGGATTCTTTCGGGTATATACA 150856 | ||| | ||| || || ||||| Sbjct 30 CTGTGGTGCAAATTTTGGATAAATACA 4 >seq96370 Length=465 Score = 84.2 bits (92), Expect = 5e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTC-GGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||||||||||||| |||||||||| | || |||| | ||||||||||||||||| Sbjct 330 GCCCGTCTAGCTCAGTTTGGTAGAGCGCTTGGCTCTTAACCAAGTGGTCGTGGGTTCGAG 389 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 390 CCCCACGGTGGGC 402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1056344622557760