Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq59922 196 5e-45 seq75063 113 5e-20 >seq59922 Length=6033 Score = 196 bits (216), Expect = 5e-45 Identities = 584/890 (66%), Gaps = 26/890 (3%) Strand=Plus/Minus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 ||||||| || | ||| | ||||| || ||||| ||||| || | | || || | | Sbjct 1146 TTTGGTATTCACCAACTCTCTTTTCAAAGAAGTTCGTTTTCCCTTGAATTGAAATCATTT 1087 Query 16734 CCATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTA 16793 ||||||||||||| || || || || |||| ||| || || | ||| | || Sbjct 1086 CCATGAAATCAAATGGGTTTGTCGCGTTGAATACTTTTTCGTTTCCTAATTCCAACAATA 1027 Query 16794 ATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGAC 16853 ||||||| || ||||| || || ||||| |||| || || | ||||||||| || | || Sbjct 1026 ATCTATCAGCAACAAACTCAATGTATTGCGACATCAAATCACTGTTCATTCCGATTA-AC 968 Query 16854 GT-ACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATA 16912 | || ||||| ||||| | |||| || ||| || |||| || || ||||| Sbjct 967 TTAACGGGAAGTGCTTCAAGAATAAATTCTTTCTCAATTTCAACTGCGTCAAGGATAATT 908 Query 16913 CTAGCAACTCGTTCCTCGGACGGTGTAT----GTTTAAGATGTTTAAACATCAGACATGC 16968 | |||| ||||| | || ||| | | | || | | || | |||||| Sbjct 907 TTCTGAACTGTTTCCTTTGGAAGTTTATCAACGATGTGGTTGGTGTATAAT-AAACATGC 849 Query 16969 GAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGG 17028 |||||| || || ||||| |||||||| ||| | |||||||| || | | ||| || Sbjct 848 GAAATCACAGTGCAATCCTTCGTCTCTTGAGATTAACTCGTTAGAGAAAGAAAGCCCTGG 789 Query 17029 CATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACC 17088 |||| ||||| |||||| ||||| | || | ||| || || || ||||| || || Sbjct 788 CATCAGTCCTCTTTTCTTCAACCAGTAAATTGAACAGAAAGAACCTGAGAAGAAAATTCC 729 Query 17089 CTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCA 17148 || || | |||||| || | | || ||| || | | || | | | |||||| Sbjct 728 TTCCACTGCTGCAAATGCAACAAGTCTTTCTGCAAATG----ATCCT--TCATCAATCCA 675 Query 17149 TTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAA 17208 | |||| || |||||| ||| | || ||||| || || || || ||||| || Sbjct 674 ACGCAAAGCCCAATCTGCTTTTACCTTAACACATTCCATTGTGTCAATAGCATTAAACAA 615 Query 17209 TTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGA 17268 | ||||| |||| ||| | || || ||||| || | || ||| |||| || Sbjct 614 ATATTCTTTGTCCTTCGTGTCTTTAATGTAAGTATCTATTAAAAGCGAATACGTTTCAGA 555 Query 17269 GTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTAT-TTGAA 17327 ||| ||||| || | |||| || || ||||| || || || || | ||| |||| Sbjct 554 GTGAATGTTTTCAACTGCTACTTGGAACCCGTAGAAAAATTTTGCCTCAG-TATACTGAA 496 Query 17328 CTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAA 17387 |||| |||| || |||| ||||| || || || || || || ||||||| Sbjct 495 CTTCTGACAAGAAATTCTCTGCTAAGTTTTCATTTACAATTCCATCTGATGCCGCGAAAA 436 Query 17388 ACGCCAATATATGCTTAATGAAA------TATTTTTCGTCCGGTGTAAGAACGCGCCAGT 17441 | ||||||| ||| |||| ||| | || |||| | | | | | ||| | Sbjct 435 AAGCCAATACATGTTTAACAAAATGACGTTCATTATCGTTCAGCTTCGTATC---CCAAT 379 Query 17442 CCTTTAAATC-TTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTT 17500 | |||| || | || | ||| | ||||||| ||||| |||||||| | |||||| Sbjct 378 CAATTAAGTCGGCTTGA-AGATCAATCTCTTCGGCTGTCCAGAAACTAGCTTCGGCCTTT 320 Query 17501 TTATACATATTCCAAATATCATTGTATTGTATGGGGAATACAACATATCT 17550 || || | | |||||| |||| || ||| || || |||| |||| |||| Sbjct 319 TTGTAGAAAGCCCAAATGTCATCGTGTTGAATTGGAAATAGAACAAATCT 270 >seq75063 Length=1318 Score = 113 bits (124), Expect = 5e-20 Identities = 425/662 (64%), Gaps = 11/662 (2%) Strand=Plus/Plus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 |||| || || || || | ||||||| || |||||||| || | || || || | | Sbjct 115 TTTGATACTCACTTACTTTTCTTTCGAAGAAATTAGTTTTTCCTTGAAGTGAAATCATGT 174 Query 16734 CCATGAAATCAAAAGGATTAGTAGC-TGAAAATATTTTAGAGTACCCCA---GTTCGGCG 16789 |||| | || || |||||| || | || | ||| | ||| ||| || | | Sbjct 175 CCATCCATTCGAATGGATTAACTGCATTGAAGTGCTTTGG--TACTCCAAGAGTAAAGAG 232 Query 16790 ATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATA 16849 | | |||||| || ||||| || |||||||| | ||| | || || ||||| || ||| Sbjct 233 A--AGTCTATCAGCAACAAACTCAATATATTGTCCCATAAGTTTGCTATTCATACCAATA 290 Query 16850 AGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATA 16909 || ||| || | || ||| | | |||| |||| || | || ||||| | | | Sbjct 291 AGTTCTACGGGCAAAGATTCAGATACAAATTCAAGCTCAATTGCTACTGCTTCAGTCAAA 350 Query 16910 ATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCG 16969 || | || || ||| | || ||| | ||||||| ||| || ||| || Sbjct 351 ATTTCATAAATTCTTTCATTTGATACCTTATTAACCATATGTTTATACAACAAACAAGCA 410 Query 16970 AAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGC 17029 || || |||||||||||| ||||| ||| | || ||||| || | || ||| Sbjct 411 AAGTCAGTATGTAATCCCTCATCTCTTGAGATCAACTCATTAGAGAAACAAAGGCCTGGC 470 Query 17030 ATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCC 17089 || || || || ||||| || || ||| || |||||||| ||||| || || Sbjct 471 ATAAGAGATCTCTTTTTCAACCAGAAAATTGCGCAAAAAGACCCAGAGAAGAAAATTCCT 530 Query 17090 TCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCAT 17149 || || | |||||||| || |||| ||| || | | ||| || ||| ||||||| Sbjct 531 TCTACACAAGCAAACGCAATCAATCTTTCAGCAAA---TGAGTCATTCTTATTAATCCAT 587 Query 17150 TTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAAT 17209 || |||| || || || | ||| | || || | || || |||||||| | Sbjct 588 TTAAAAGCCCAGTCAGCCTTCTTCTTAACAGTTTCAATATTATCAATAGCCTTAAAAAGG 647 Query 17210 TTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAG 17269 |||||||| | || || | ||||| ||||| || || || ||| |||| | Sbjct 648 AAATCTTTTTCTTTGAGATCACTAATATAAGTATCAATAAGGAGAGAGTAAGTTTCACTG 707 Query 17270 TGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACT 17329 || | |||||||| | || || || || ||||||| |||| | ||||| ||| Sbjct 708 TGAACATTCTCCATCATACTTTGGAAGCCATAGAAGCATCTAACTTCAGGGATTTGTACT 767 Query 17330 TC 17331 || Sbjct 768 TC 769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516839460783360