Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq59922 183 3e-41 seq75063 141 9e-29 >seq59922 Length=6033 Score = 183 bits (202), Expect = 3e-41 Identities = 583/889 (66%), Gaps = 44/889 (5%) Strand=Plus/Minus Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971 ||||||| |||| ||| | ||||| |||||||| ||||| || | | || || ||| Sbjct 1146 TTTGGTATTCACCAACTCTCTTTTCAAAGAAGTTCGTTTTCCCTTGAATTGAAATCATTT 1087 Query 15972 CCATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTA 16031 |||| |||||||| || || || || |||| || || || | |||| | || Sbjct 1086 CCATGAAATCAAATGGGTTTGTCGCGTTGAATACTTTTTCGTTTCCTAATTCCAACAATA 1027 Query 16032 ATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTC 16091 ||||||| || ||||| || || ||||| |||| || || | || ||||| || | Sbjct 1026 ATCTATCAGCAACAAACTCAATGTATTGCGACATCAAATCACTGTTCATTCCGATTAACT 967 Query 16092 GTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTC--------TTT 16143 || ||||| |||| | ||||| || || || |||| || || ||| Sbjct 966 TAACGGGAAGTGCTTCAAGAATAAATTCTTTCTCAATTTCAACTGCGTCAAGGATAATTT 907 Query 16144 AATGA----TATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTA 16199 ||| | || | | || | ||| ||| ||| |||| ||||| ||| || Sbjct 906 TCTGAACTGTTTCCTTTGGAAGTTTATCA-ACGATGT--GGTT--GGTGTATAA----TA 856 Query 16200 GACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTA 16259 ||| ||||| || || || | |||||||||||| ||| | ||||| || |||| | Sbjct 855 AACATGCGAAATCACAGTGCAATCCTTCGTCTCTTGAGATTAACTCGTTAGAGAAAGAAA 796 Query 16260 ACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGA 16319 ||||||||| ||||| |||||| |||||| | || | | || || || || |||| Sbjct 795 GCCCTGGCATCAGTCCTCTTTTCTTCAACCAGTAAATTGAACAGAAAGAACCTGAGAAGA 736 Query 16320 ATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTAC 16379 | || || || || | |||||| || | | || ||| || | | ||| | | | Sbjct 735 AAATTCCTTCCACTGCTGCAAATGCAACAAGTCTTTCTGCAAATG----ATCCT--TCAT 682 Query 16380 GAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCT 16439 |||||| | |||| || |||||| || | ||| ||||| || || || || | Sbjct 681 CAATCCAACGCAAAGCCCAATCTGCTTTTACCTTAACACATTCCATTGTGTCAATAGCAT 622 Query 16440 TAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTG--TA 16497 ||||||| | ||||| |||| | || | || || ||||| || | ||| | || Sbjct 621 TAAACAAATATTCTTTGTCCTTCGTGTCTTTAATGTAAGTATCTATTA--AAAGCGAATA 564 Query 16498 CATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGC 16557 | |||| ||||| ||||| || | |||| || || || ||||| || ||||| | Sbjct 563 CGTTTCAGAGTGAATGTTTTCAACTGCTACTTGGAACCCGTAGAAAAATTTTGCCTCAG- 505 Query 16558 TAT-TTGTACTTC---CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCAC 16613 ||| || ||||| || | ||| || || || | ||| ||||| || || || || Sbjct 504 TATACTGAACTTCTGACAAG-AAATTC--TCTGCTAAGTTTTCATTTACAATTCCATCTG 448 Query 16614 TTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAG---AA 16670 ||| || ||||| ||||||| || |||| |||| ||| | | | || Sbjct 447 ATGCCGCGAAAAAAGCCAATACATGTTTAACAAAATGACGTTCATTATCGTTCAGCTTCG 388 Query 16671 TATGCCAATCTTTTAAATC-TTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCC 16729 ||| |||||| |||| || | || | ||| | ||||| | ||||| || ||||| Sbjct 387 TATCCCAATCAATTAAGTCGGCTTGA-AGATCAATCTCTTCGGCTGTCCAGAAACTAGCT 329 Query 16730 ACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATA 16778 | |||||||| || | |||||| |||| || ||| || ||||||| Sbjct 328 TCGGCCTTTTTGTAGAAAGCCCAAATGTCATCGTGTTGAATTGGAAATA 280 >seq75063 Length=1318 Score = 141 bits (156), Expect = 9e-29 Identities = 567/885 (64%), Gaps = 16/885 (2%) Strand=Plus/Plus Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971 |||| || ||||| || | |||||||||| ||||||||||| | | || || | | Sbjct 115 TTTGATACTCACTTACTTTTCTTTCGAAGAAATTAGTTTTTCCTTGAAGTGAAATCATGT 174 Query 15972 CCATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTA 16031 |||| | || || |||||| || || ||| | |||| ||| |||| | Sbjct 175 CCATCCATTCGAATGGATTAACTGCATTGAAGTGCTTTG-GTACTCCAAGA--GTAAAGA 231 Query 16032 A---TCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAA 16088 |||||| || ||||| || |||||||| | ||| | | || ||| || || |||| Sbjct 232 GAAGTCTATCAGCAACAAACTCAATATATTGTCCCATAAGTTTGCTATTCATACCAATAA 291 Query 16089 GTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGA 16148 || ||| || | || || | || ||||| | || || | || ||||| | | | Sbjct 292 GTTCTACGGGCAAAGATTCAGATACAAATTCAAGCTCAATTGCTACTGCTTCAGTCAAAA 351 Query 16149 TATCGGTGGCTCGTG--TTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGC 16206 | || || | ||| | || | | || |||||| ||| | ||| || Sbjct 352 TTTCATAAATTCTTTCATTTGATACCTTATTAACCATA--TGTTTATACAACAAACAAGC 409 Query 16207 GAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGG 16266 ||||| ||||| ||| || ||||| ||| | || || || ||| | ||||| Sbjct 410 AAAGTCAGTATGTAATCCCTCATCTCTTGAGATCAACTCATTAGAGAAACAAAGGCCTGG 469 Query 16267 CATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACC 16326 ||| || || || |||||||| || || ||| ||||| || ||||| || || Sbjct 470 CATAAGAGATCTCTTTTTCAACCAGAAAATTGCGCAAAAAGACCCAGAGAAGAAAATTCC 529 Query 16327 CTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCA 16386 || ||| | ||||| || || |||| ||| || | | ||| |||||| ||||| Sbjct 530 TTCTACACAAGCAAACGCAATCAATCTTTCAGCAAATGAGTCATTCTTATTA---ATCCA 586 Query 16387 TTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAA 16446 ||| |||| || || || | || | | || || | || || |||||||| | Sbjct 587 TTTAAAAGCCCAGTCAGCCTTCTTCTTAACAGTTTCAATATTATCAATAGCCTTAAAAAG 646 Query 16447 TTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGA 16506 |||||||| | | ||| | ||||| |||||||| || | | ||| |||| Sbjct 647 GAAATCTTTTTCTTTGAGATCACTAATATAAGTATCAATAAGGAGAGAGTAAGTTTCACT 706 Query 16507 GTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTAC 16566 ||| | ||||| || | || || ||||||||||||| | | || | |||||||| Sbjct 707 GTGAACATTCTCCATCATACTTTGGAAGCCATAGAAGCATCTAACTTCAGGGATTTGTAC 766 Query 16567 TTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAA 16626 ||| | || | ||| || |||||| || || || ||| ||||| || || Sbjct 767 TTCAGCAGCGAAGCATTCAATAAGATTCTCAAGGACAATTCCATCAGAAGCAGCGAAGAA 826 Query 16627 CGCCAATATGTGCTTAATGAAATATTTTTCGTCA-GATGTAA--GAATATGCCAATCTTT 16683 || | | || || ||||| | | | || ||| || ||| | || ||||||||| Sbjct 827 AGCAAGCACGTATTTGATGAAGTGTCTCTCATCATCATTTAATTTATCATTCCAATCTTT 886 Query 16684 TAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATA 16743 ||||||| | | ||| | ||||| | |||||||| || | |||||| || Sbjct 887 TAAATCTGAAGCCAAATCTATCTCTTCAGCTACCCAAAAGCATGCTTGTTGCTTTTTGTA 946 Query 16744 CATTTTCCAAATATCATTGTATTGTATGGGAAATACGACGTATCT 16788 ||||| ||||| || | |||||| || || || | ||| |||| Sbjct 947 CATTTCCCAAACGTCGTGGTATTGGATTGGGAAAAGAACGAATCT 991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510716626192640