Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq70280 122 6e-23 >seq70280 Length=1721 Score = 122 bits (134), Expect = 6e-23 Identities = 272/402 (68%), Gaps = 11/402 (3%) Strand=Plus/Plus Query 101759 TGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCC 101818 |||||||||||||| || | ||| ||| ||||| || || ||||| ||||||| || Sbjct 302 TGAGCAATCATGCAGGTGAGTAGACTATAACTAGCTATATTGAATGGTACTCCTAGACCA 361 Query 101819 ATATCAGCTGATCTTTGATACAGTTGACAGGA-AAGCT--TTCCATCACAGACATAAAAT 101875 |||||| |||||||||| |||||||| || || || | | ||||| || Sbjct 362 ATATCACAACTCCTTTGATACATCTGACAGGATAATCTATTTTTAGTATCAACATAGAAC 421 Query 101876 TGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCA 101935 || | | | ||| ||||| || | |||| || | ||| | ||||||||| ||| Sbjct 422 TGGCAGATGATATGGCAAGGTGGTAGAGCCATCTTCTTTAAGTCAGCAACATTCCATGCA 481 Query 101936 CACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAAT 101995 | | || |||| | ||| || || | ||| || | | || | ||||| Sbjct 482 TTAAGAATAATTCTTCGA-CTGGTTGGATTCTCTTTGAGGTCTTTAATAATATTCTTAAT 540 Query 101996 TGG-TCAACTCCTTCTCCTTTATA---ATCGCGCCCAACACCTTTATATTCTGCTCCGAA 102051 | | || ||||||| ||||| ||| ||| || | | |||||||| ||||| || Sbjct 541 TTGATCGACTCCTTGTCCTTCATAGTCATCATGC---ATAGTCTTATATTCAGCTCCAAA 597 Query 102052 ATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACC 102111 || ||||| || || ||||| || ||||||||||| ||||| ||||| || ||| || Sbjct 598 GTGTCTCCATTGGAAACCATATACTGGTCCAAGATCACCTTCTTCTCTTTCTGTAAATCC 657 Query 102112 AAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAAT 102153 | ||||| | |||| ||| || || || ||||||| || Sbjct 658 ATTGTTATCAAGAAATTCTCTTGAGCCGTTACCATCCCAGAT 699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360770631141152