Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq59922 340 2e-88 seq75063 206 3e-48 seq64137 150 2e-31 seq3443 123 3e-23 seq14334 89.7 6e-13 seq17866 87.8 2e-12 >seq59922 Length=6033 Score = 340 bits (376), Expect = 2e-88 Identities = 627/903 (69%), Gaps = 21/903 (2%) Strand=Plus/Minus Query 23831 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 23890 || |||||| ||||||||||||||| || | ||||| || || || ||||| |||| Sbjct 1160 CAAAACTCCAGCTTTTTGGTATTCACCAACTCTCTTTTCAAAGAAGTTCGTTTTCCCTTG 1101 Query 23891 TAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCC 23950 | ||| || ||||||||||||| |||| || || | || | | | ||| ||| Sbjct 1100 AATTGAAATCATTTCCATGAAATCAAATGGGTTTGTCGCGTTGAATACTTTTTCGTTTCC 1041 Query 23951 CAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATT 24010 ||||| | | |||||||| || |||||||| || ||| ||||| |||| || Sbjct 1040 TAATTCCAACAATAATCTATCAGCAACAAACTCAATGTATTGCGACATCAAATCACTGTT 981 Query 24011 CATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGC 24070 |||||| || | ||||| ||||| || || || |||||||| ||||| || || Sbjct 980 CATTCCGATTAACTTAACGGGAAGTGCTTCAAGAATAAATTCTTTCTCAATTTCAACTGC 921 Query 24071 GTCTGTTATAATAGATCTTA-CTGTTTCTTCACTCGGTGGATACAATAAATGTTTAA--- 24126 ||| ||||| ||| | ||||||| | || || | | || || Sbjct 920 GTCAAGGATAATTT-TCTGAACTGTTTCCTTTGGAAGTTTATCAACGATGTGGTTGGTGT 862 Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 | | |||||||||||||| ||||| | || |||||||| ||||| ||||| || | Sbjct 861 ATAATAAACATGCGAAATCACAGTGCAATCCTTCGTCTCTTGAGATTAACTCGTTAGAGA 802 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCA--AAATATGGACGCAAATGATCC 24244 | | || || ||||| || || | || || | ||| |||| || || ||| || || Sbjct 801 AAGAAAGCCCTGGCATCAGTCCTCTTTTCTTCAACCAGTAAAT-TGAACAGAAA-GAACC 744 Query 24245 AGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCT 24304 || |||||||||||||| ||||| ||||| |||| |||||||||| || | | | Sbjct 743 TGAGAAGAAAATTCCTTCCACTGCTGCAAATGCAACAAGTCTTTCTGCAAAT---GATCC 687 Query 24305 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTAT 24364 |||| ||||| ||||||||| || || || ||||| |||||| || || Sbjct 686 TTCATCAATCCAACGCAAAGCCCAATCTGCTTTTACCTTAACACATTCCATTGTGTCAAT 627 Query 24365 AGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACT 24424 ||||||||| | ||| | ||| || || | ||||||| || ||||| || ||||| Sbjct 626 AGCATTAAACAAATATTCTTTGTCCTTCGTGTCTTTAATGTAAGTATCTATTAAAAGCGA 567 Query 24425 ATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTC 24484 |||| |||| || ||||||||||||| || | ||| || ||||||||| || | ||||| Sbjct 566 ATACGTTTCAGAGTGAATGTTTTCAACTGCTACTTGGAACCCGTAGAAAAATTTTGCCTC 507 Query 24485 GGTAATCTGTACTTCTATACAAAATCGT-TCTGCTAAATTTTCATTCACTATTCCGTCAC 24543 ||| ||| |||||| |||| | | |||||||| |||||||| || ||||| || Sbjct 506 AGTATACTGAACTTCTG-ACAAGAAATTCTCTGCTAAGTTTTCATTTACAATTCCATCTG 448 Query 24544 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT-ATTTTTCGTCTGGTGTTAGTT-- 24600 || || ||||| |||||||||||||| | ||||| | || | | || | || | Sbjct 447 ATGCCGCGAAAAAAGCCAATACATGTTTAACAAAATGACGTTCATTATCGT-TCAGCTTC 389 Query 24601 -TATTCCAATCATTGATATC-TTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC 24658 ||| ||||||| | | || | || | ||| | ||||| ||||||| || || Sbjct 388 GTATCCCAATCAATTAAGTCGGCTTGA-AGATCAATCTCTTCGGCTGTCCAGAAACTAGC 330 Query 24659 CTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 24718 || |||||||| || | | ||| ||||||| | |||||||||||| | ||||||||| Sbjct 329 TTCGGCCTTTTTGTAGAAAGCCCAAATGTCATCGTGTTGAATTGGAAATAGAACAAATCT 270 Query 24719 ATT 24721 || Sbjct 269 GTT 267 Score = 320 bits (354), Expect = 2e-82 Identities = 943/1437 (66%), Gaps = 35/1437 (2%) Strand=Plus/Minus Query 53519 ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAG 53578 || || || |||||||| ||||||||||| | || || || | || | | | |||||| Sbjct 2789 ATGAAAGCATCTGCTAACCCTTGAACACCTAATCCAATTGGACGGTGACGCATGTTAGAG 2730 Query 53579 ATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTC-TGAC 53637 ||| ||||||| || || || | ||| ||| || |||||||| | ||| || | Sbjct 2729 TTTTTAGCTTCTTCAACTGGGTAGAAGTTACCATCAATGATTTTATTCAAGTTCAATGTC 2670 Query 53638 AATT---ACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATCTATTACAAA 53694 || || || || || || |||| ||| |||| || || || | || Sbjct 2669 GCTTGGTACGTT----ACCTCGAACAATTTGTCGTGATCGAATTTCCCTTC-ATCAGTAA 2615 Query 53695 CATGTT----CAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCAT 53750 ||| || |||||| | ||| |||| |||||||| || ||||||| | | | | Sbjct 2614 CATATTTAGGCAATGCTAAAGAAGCCAAGTTACAAACTGCAACCTCATCTGGCGCAGTGT 2555 Query 53751 ATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTAC 53810 | | ||| |||||||| || | || | |||| || || ||||| |||||||| || Sbjct 2554 ACTCTATAATCTCAGTACATAAGTTTGAAGACTTAATTGTACCTAAGTTTTGTTGGTT-- 2497 Query 53811 TCTTTTTG---TTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGG 53867 | ||||| || || ||||| || || | ||| | || ||||| || ||||| || | Sbjct 2496 TGATTTTGAGTTTGCA-GCATCTTTGTACAACATGTAAGGAGTACCTGTCTCAATTTGAG 2438 Query 53868 ATTCTATAATCGCTTT---CCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTT 53924 |||||| || ||| ||| | | | | || || ||| | | | | || | Sbjct 2437 ATTCTAAGAT---TTTGAACCAAAGGTCTTGTGCTTTGATTGTTTTTCTTCCTTTCCCTG 2381 Query 53925 CTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAG 53984 || ||||||| || ||||| ||| || || | | |||| | || | Sbjct 2380 CTTTTTCGTACTTCGTGTACAACGCTTCGAATTCAGCACTGTGCACATCTGAAAGACCTG 2321 Query 53985 GACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGA 54044 | ||||| | ||||||||| || | ||||||||| | || ||||| |||| ||| || | Sbjct 2320 GGCATTCGTGCGGACACATTAAAGTCCACTCTCCATTTTCTTTCACACGTTGCATGAATA 2261 Query 54045 GATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTAT 54104 ||| |||| ||| | ||| ||||| |||||| | ||| || || || || || || Sbjct 2260 AATCTGGAACCCACAAAGCGTAAAATAAATCTCTTGCTCTTTGCTCTTCTTTACCGTGAT 2201 Query 54105 TCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCA 54164 | || || | || | ||| | | | ||||| |||||| || |||||||| || | | Sbjct 2200 TTTTCTTCAAGTCTAAGAAGTCAAATACATCAGCATGCCAAGGCTCCAAGTACATTGCGA 2141 Query 54165 TAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 54224 | || ||||| ||| || ||||||| ||||||||| || | ||| | |||| Sbjct 2140 AAGAACCTTTACGTTTTCCTCCACCTTGATCTACGTATCTAGCAGTATCGTTAAATACTC 2081 Query 54225 TCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGG 54284 | |||||||||| ||||| || || ||||| || || || ||| || || | | Sbjct 2080 TTAACATTGGAACGATACCGTTAGAAGCACCGTTTGTTCCTTTGATGTATGAACCTGTCG 2021 Query 54285 CACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATC 54344 |||| || || || | | || || || || || || |||||| || ||| Sbjct 2020 CACGGATGTTGTGCATAGCCAATCCAATTCCACCAGCTGATTGAGAGATCTGAGCACATT 1961 Query 54345 GTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAG 54403 ||||||| || ||||| || || || |||||||| ||| |||| ||||| |||| || Sbjct 1960 GTTTTAATGTGTCATAAATTCCTTCAATACTATCTTCCTTCATTGTTAAAAGGAAACAAG 1901 Query 54404 CTAGACATTTG--GTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 54461 | |||||||| || | | ||||| | ||||| || || || | ||||| || | Sbjct 1900 AT-GACATTTGTGGTTTTGGC--GTTCCAGAGTTAAACAACGTTGGTGTTGCGTGTGTGA 1844 Query 54462 ACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAA 54521 ||||| ||| || | || ||||| |||| || || ||||| ||||| || |||| Sbjct 1843 ACCATCCTTCTGACATTAAGTTGTATGTCTTAATTGCAGAGTCGATATCTTTTTTGTGAA 1784 Query 54522 TTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTT 54581 |||| || | |||||||| ||||| || || || | ||| | ||| | ||| | || Sbjct 1783 TTCCAACAGAAACACGCATCAACATTTGTTGTGGGCGTTCTGCAATCATTCCGTTCAATT 1724 Query 54582 TCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 54641 ||| | ||| || ||| ||||||||||||||||||| |||| ||| |||| | Sbjct 1723 TCATTAGGTACGAGCGCGTCAACGTTTTAAAACCAAAATAGTCGTATCTAAAATCTCTAT 1664 Query 54642 CGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATC--CATGGTAAT 54699 ||||||| || ||| | || || |||| || | | | || | || | Sbjct 1663 CGTAAATGATGCTTGAATCAAGACGGTCTTTATTTTCCATCATGATCTCGTAAACGTCGT 1604 Query 54700 ACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTT 54759 || || |||| | | || || ||| |||| |||| | || | | ||| | Sbjct 1603 -CTGCAACTAAT-GATGCATTTTCTCCAGTTTTTGGATCAATGTAATCGTGCATATCTGT 1546 Query 54760 CATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGC 54819 ||| |||||| || | || |||||||||||||| | |||||||| || || | | Sbjct 1545 CATTACTTCAGAGAAAACCTTCTTTGTTTCTTTGTGCAAGTTTGATACAGCAATACGTGA 1486 Query 54820 GGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAG 54879 || | | |||||||| ||||| | | || | ||||| | ||| |||| || Sbjct 1485 AGCCAACAACGCATAATCAGGATGATCAATTGTTTTTGCCGCTGCCACTTCAGCTGCAAG 1426 Query 54880 AGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGC 54936 |||| |||| | ||||| ||||||| | | | |||| || |||||||| || Sbjct 1425 GTTGTCTAATTGTGTTGTTGTAACTCCATCAAACAACCCTTCAATTACCTTCATGGC 1369 >seq75063 Length=1318 Score = 206 bits (228), Expect = 3e-48 Identities = 607/925 (66%), Gaps = 28/925 (3%) Strand=Plus/Plus Query 23811 AAATGATTGTCT---TCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTT 23867 |||| |||||| |||| |||||||| || |||||| || |||| || | || Sbjct 78 AAATTCTTGTCTGTGTCTTTTGACATAACCCCTGCTTTTTGATACTCACTTACTTTTCTT 137 Query 23868 TCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGGATGGATTGGTA 23927 ||||| ||||||||||| |||| | ||| || | ||||| | ||| ||||||| Sbjct 138 TCGAAGAAATTAGTTTTTCCTTGAAGTGAAATCATGTCCATCCATTCGAATGGATTAACT 197 Query 23928 ACATTATAGATTCTTTTAAATCCCAA---TTCAGAAATCAATCTATCTGCGACAAACTCC 23984 |||| || | |||| | |||| | ||| | | |||||| || |||||||| Sbjct 198 GCATTGAAG-TGCTTTGGTACTCCAAGAGTAAAGAGA--AGTCTATCAGCAACAAACTCA 254 Query 23985 ATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTA 24044 |||||| | ||| | || | |||||| || ||||||| || || | || ||| Sbjct 255 ATATATTGTCCCATAAGTTTGCTATTCATACCAATAAGTTCTACGGGCAAAGATTCAGAT 314 Query 24045 AGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTC 24104 | |||||| | ||||| | || || || || | ||| || || ||||| || Sbjct 315 ACAAATTCAAGCTCAATTGCTACTGCTTCAGTCAAAATT--TCATAAA--TTCTT---TC 367 Query 24105 GGTGGATAC---AATAA----ATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACC 24157 | ||||| | ||| ||||||| ||| |||||| || || || |||| || Sbjct 368 ATTTGATACCTTATTAACCATATGTTTATACAACAAACAAGCAAAGTCAGTATGTAATCC 427 Query 24158 CTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTT 24217 ||| ||||| || || || || || || || || ||||| || | |||||| Sbjct 428 CTCATCTCTTGAGATCAACTCATTAGAGAAACAAAGGCCTGGCATAAGAGATCTCTTTTT 487 Query 24218 AAGCCAAAATATGGACGCAAAT-GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||| || || | |||||| || ||||| ||||||||||||||||| ||||| | Sbjct 488 CAACCAGAAAATTG-CGCAAAAAGACCCAGAGAAGAAAATTCCTTCTACACAAGCAAACG 546 Query 24277 CAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCT 24336 |||| | |||||| || | | | | | || ||||| || |||||| || |||| Sbjct 547 CAATCAATCTTTCAGCAAATGAGTCATTCTTATTAATCCATTTAAAAGCCCAGTCAGCCT 606 Query 24337 TCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTAT 24396 |||| || ||| || | || ||||| ||||| || | | |||||| || || Sbjct 607 TCTTCTTAACAGTTTCAATATTATCAATAGCCTTAAAAAGGAAATCTTTTTCTTTGAGAT 666 Query 24397 CTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCA 24456 | ||| ||| |||||||| | ||| || |||| |||| || || || Sbjct 667 CACTAATATAAGTATCAATAAGGAGAGAGTAAGTTTCACTGTGAACATTCTCCATCATAC 726 Query 24457 TTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTG 24516 |||| || || ||||| |||||| | || | || |||||||| | || | ||| Sbjct 727 TTTGGAAGCCATAGAAGCATCTAACTTCAGGGATTTGTACTTCAGCAGCGAAGCATTCAA 786 Query 24517 CTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 24576 | ||| ||| || ||||| ||| || || || || || | || | ||| || | Sbjct 787 TAAGATTCTCAAGGACAATTCCATCAGAAGCAGCGAAGAAAGCAAGCACGTATTTGATGA 846 Query 24577 AATATTTTTCGTCTGGTGTTAGTTT---ATTCCAATCATTGATATCTTTAGATATATCCA 24633 | | | | || || ||| ||| ||||||||| || | |||| || | ||| | Sbjct 847 AGTGTCTCTCATCATCATTTAATTTATCATTCCAATCTTTTAAATCTGAAGCCAAATCTA 906 Query 24634 CTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGAT 24693 ||||| || |||||| |||| | | |||||| ||||| | ||| | ||| || | Sbjct 907 TCTCTTCAGCTACCCAAAAGCATGCTTGTTGCTTTTTGTACATTTCCCAAACGTCGTGGT 966 Query 24694 ATTGAATTGGAAAAATAACAAATCT 24718 |||| ||||| |||| ||| ||||| Sbjct 967 ATTGGATTGGGAAAAGAACGAATCT 991 >seq64137 Length=2701 Score = 150 bits (166), Expect = 2e-31 Identities = 1135/1811 (63%), Gaps = 45/1811 (2%) Strand=Plus/Minus Query 52835 TTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATA 52894 || ||||| ||||| || ||| ||||||| || ||||| | || ||||||||| Sbjct 2391 TTTGTACGGAGATAATAAGATCCTGTTTTTAATCCATTCCTCCAAGCATAGAAATGCATA 2332 Query 52895 CTTGTTAG--TTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGAT 52952 || | | ||| ||| | | || ||| | ||| | ||||| ||||||| |||| Sbjct 2331 CTACTCAACTTTTTGAA--AGTAGGTTCTCCCATAAATACATTCAAAGATTGAGATTGAC 2274 Query 52953 CGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAA 53012 ||| | | | || || ||| | || | || ||| ||||| || ||||||| Sbjct 2273 AGATATATGGAGCTCTCTCAATAGCGAGATTGAGGAGGACCTTCTGTGGGATCTCCCAAA 2214 Query 53013 TAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTA--TTCT-GAATAGATCCAC 53069 |||||||| | | ||| | ||| ||||||| |||| |||| | ||| ||| Sbjct 2213 CTGTTTTATAGAGTTTCTTTAGATCATCTGGAATACCTGTAACTTCTTGTCAAGAACCAT 2154 Query 53070 CATCTACCA--TAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAAC 53127 | ||||| ||| | ||||||||||| | ||||||| | | | || ||| | | Sbjct 2153 TTT-TACCAATTAAGGCG-TTCTTGATCTCCCAAGTCCATAAATCTTTTTCAATTAGATC 2096 Query 53128 TCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAAT 53187 | | | || || ||||| || || |||||||||| || ||||| | |||||| || Sbjct 2095 TTTTACAAGGTGGGGATTTACAACCATGAATTCTCCAGCCAGGACTCTTCTAGTGTAGAT 2036 Query 53188 ATT--ACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCA 53245 ||| | | | || || || | | || || |||||||| ||||| | || ||| Sbjct 2035 ATTTGAATTGAAT--GGCTCAAAACTTTCGTTGTTTCCCAAGATTTGGGAGGTACTAGCA 1978 Query 53246 GTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTT 53305 || ||||| ||||| || | || | ||||||| ||| | || | | || ||| || Sbjct 1977 GTAGGCATTGGTGCTACAAGTAGAGAGTTTCTAATACCATGGGTCTTTACTTCTTCTCTT 1918 Query 53306 AGAGGTTCCCAATTCCAAAGATCCG---ACGGTACAACNNNNNNNNNNNNNNNTTGTAGA 53362 | | ||||| | | || | | || || ||| | Sbjct 1917 AATGTATCCCAGTCGTATCTGTCAGTGTATGGCTTGACGTTCCAAAGATCGAATTGGAAT 1858 Query 53363 ATACCGTTACTGGCGT--ACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTA 53420 |||| | | | | | |||||| | || || || | |||||||| || ||||| Sbjct 1857 TTACC--TTCAGACATTGGAGATCCTGGGAAAGTTTCATAAGTTCCTTCCTCCTTAGCTA 1800 Query 53421 GTTC--ACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAG 53478 ||| | | | | || ||| | | || ||||| || |||||||||||||| | Sbjct 1799 ATTCTAAAGATTTGGAGATA--GCAGCATGGTAGATGGTCTCAAAGATCTTCTTATTCAC 1742 Query 53479 ATC--TTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAAT 53536 ||| | | ||| || || ||||||||| || | || || || || | Sbjct 1741 ATCATTAGCTCTTTCA-TCT-TCAAATGGAATCTTCATCTTCTGGAAAGCATCAGCAAGC 1684 Query 53537 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 53596 ||||| ||||| || || | |||||||| ||| ||| || ||||||||| |||| Sbjct 1683 CCTTGCACACCGATTCCAACAGGTCTATTTCTAAAATTTGAATATTCAGCTTCAGGAACT 1624 Query 53597 GGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCC 53656 ||||| | ||| |||| |||| | | || | ||| | ||| | | || || Sbjct 1623 GGATAGAAGTTATTATCAATAACTCTGTTCAAGTTCTTTGTAATGATCATAGTAACTTCA 1564 Query 53657 TTCAGTTTGAGAAAATCAAATTGTCCATCTATTACAAACATGTT----CAATGCAATAGA 53712 | || | | ||||| |||||| || | || | || ||||| ||| || Sbjct 1563 TGTAGCCTTTCGTAGTCAAAGGTACCATCTTCTA-ATACGTATTTTGGCAATGAAATTGA 1505 Query 53713 TGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAG 53772 || || ||||| || ||||| | || ||| | || | || |||||| ||| || Sbjct 1504 GGCGAGGTTACATACAGCTACTTGATCTTTATCAGTGTACTCCATGATCTCACAGCAGAG 1445 Query 53773 ATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTA-CACGCATCCT 53831 || || |||||| ||||| | ||| || || ||| ||| ||| || | ||||| Sbjct 1444 GTTTGAACTCTTGATAGTTCCAAGATTCTGCTGGTTAGATTTTCCATTAGCATG-ATCCT 1386 Query 53832 TATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGA 53891 |||| || ||| |||| ||||| || ||||| || || | || || ||||| | Sbjct 1385 TATACAGCATGTATGGGACTCCAGTCTCTATCTGTGACTCAAGGATGGCATTCCATAGAT 1326 Query 53892 CACGAGCCTTTATTATAGATTTGTATCTCTT--TTCTCTTTCGTATAGTGTATACAATCG 53949 | ||||| | | ||| | || || ||| | || ||| ||| | | Sbjct 1325 GTTGTGCCTTGACAGT--CTTTCTTCCTTTTCCTTCAGTCTCATATTTCTCATAGAGTTC 1268 Query 53950 TTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 54009 |||||| || | ||||||| | | |||| || ||||||| ||||| | | | Sbjct 1267 TTCAAATTCTTTTCCCCAAGTTTCGAACAATTGGGGGCATTCATTTGGACAGAAGAGTGT 1208 Query 54010 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 54069 ||| ||| | ||| | | |||| |||| || | |||| || ||| | ||| || Sbjct 1207 CCAGTCTTCATCAGCTTCTACTCTCCTCATGAATATATCACTAACCCACAAAGCGTAGAA 1148 Query 54070 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 54129 || ||||| | ||| ||||| || || || ||||| | | | ||||| | ||| Sbjct 1147 GAGGTCTCTTGCTCTCTGTTCATCTTTACCATGGTTCTTCCTCAAGTTAAGGAA-GTCAT 1089 Query 54130 -AATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTC 54188 |||||| | |||||| ||||| | ||| || | | | |||| | || |||| Sbjct 1088 AAATATCTGGATGCCATGGTTCGAGGTAGATAGCGAAAGCTCCCTTTCTCTTACCGCCTC 1029 Query 54189 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 54248 | || || | ||||| || |||| ||| | || || | |||||| | || ||||| | Sbjct 1028 CTTGGTCAACATATCTTGCAGTGTCATTGAAGACCCTAAGCATTGGGACAAGTCCATTTG 969 Query 54249 ATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGAC 54308 | ||| || || || ||| ||| | | | | |||| || | | | Sbjct 968 AGTGACCGTTTGTTCCTCTGATGTAGGAAGAAGTTGATCTAATACAGTGAACAGCCAATC 909 Query 54309 CTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 54368 | || || || || | |||||||| | || ||| ||| ||| || || | || || | Sbjct 908 CAATTCCTCCAGCATTCTTAGAGATAATAGCACATTGTTGTAATGTTTCGAAAATTCCTT 849 Query 54369 CTATACTATCATCCATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 54427 | || ||||||| || || ||| || ||| || | |||||| | || Sbjct 848 CAATTGAATCATCCCGCATTGCTAA-TAAAAAGCATGAACTCATTTGTGGTTTTGGGGTA 790 Query 54428 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 54487 || |||||||| | ||| || | ||||| || |||||||| | | | |||| || Sbjct 789 CCAGCATTAAAGAGGGTTGGTGTGGCGTGTGTGAACCATTTCTGACTCATGAGATCATAT 730 Query 54488 GTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 54547 ||||| | || || |||| || | |||||| || | | ||| | ||| | ||| Sbjct 729 GTCTCAAATGCAGATTCTAAGTCATTCTTATGAATACCAATAGAGACTCTCATAAGCATT 670 Query 54548 TGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTT 54607 ||| ||||| ||||| || || | ||||| ||| || || || ||| |||| | ||| Sbjct 669 GTCTGTGGTCTCTCAACAATTTTATCGTTTACTTTTAGTAAATATGATCTTTCAAGAGTC 610 Query 54608 TTAAAACCAAA 54618 || || ||||| Sbjct 609 TTGAACCCAAA 599 >seq3443 Length=346 Score = 123 bits (136), Expect = 3e-23 Identities = 199/286 (70%), Gaps = 0/286 (0%) Strand=Plus/Minus Query 54185 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 54244 || |||||||||| ||| | || || | ||| |||| || ||| || | ||||||| Sbjct 315 CCGCCCTGATCTACGTAACGCGCAGTATCGTTAAAAACCTGCAGCATGGGCACAATACCA 256 Query 54245 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 54304 ||||| | |||||||| || | |||||| || |||| || | ||| || || Sbjct 255 TTGGAAGTCCCATTGGTACCTGCGATATAAGAACCTGTGGCCCGTACATTGTGTATGGAA 196 Query 54305 AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 54364 ||||||||||| || || || || ||| ||| | |||||| ||||||||| || Sbjct 195 AGACCTATCCCGCCAGCAGATTGTGAAATTTTTGCCGTTTGTTTTAGCGTATCATAAATA 136 Query 54365 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 54424 || || |||||||| ||| |||| | || ||||| |||||||| | | Sbjct 135 CCATCAATACTATCGTCCTTCATTGCCAAAAGGAAACAAGAGGACATTTGAGGTTTAGGG 76 Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTT 54470 || |||| |||||| |||||||| | |||||| ||||| | |||| Sbjct 75 GTACCCGAATTAAACAAGGTAGGTGTAGCGTGGGTAAAATACTTTT 30 >seq14334 Length=297 Score = 89.7 bits (98), Expect = 6e-13 Identities = 181/263 (69%), Gaps = 7/263 (3%) Strand=Plus/Plus Query 24460 GAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTAT-ACAAAATCGTTCTGCT 24518 |||| |||||||| | | ||||||| | || ||||| | || |||| ||| ||| Sbjct 1 GAAAACCGTAGAAGAACTTTGCCTCGGCATATTGAACTTCACTTACGAAATT-TTCAGCT 59 Query 24519 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 24578 | |||||||||||| || || ||| || ||||| ||||| | | ||||||||| ||| Sbjct 60 AGATTTTCATTCACAATACCATCAGATGCAGCAAAGAACGCTAGAATATGTTTTATGAAA 119 Query 24579 TATTTTTCGTCTGGTGTT--AGT--TTATTCCAATCATTGATATCTTTAGATATATCCAC 24634 || ||| || | | || | | || |||||||||| | ||| | | || | Sbjct 120 TAACGTTCATC-GCTATTCAACTTGTTGGTCCAATCATTAAGATCCGTGTGCAGGTCTAT 178 Query 24635 TTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATA 24694 |||||| | |||||||| ||||| ||||| ||| || ||| | ||||| | Sbjct 179 TTCTTCAGCAGTCCAAAAACTAGCCTCACATTTTTTGTACCAATCCCACAAATCATGGTG 238 Query 24695 TTGAATTGGAAAAATAACAAATC 24717 || || || ||||||||||||| Sbjct 239 TTTGATAGGGAAAATAACAAATC 261 >seq17866 Length=285 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 53671 ATCAAATTGTCCATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGC 53730 |||||| | |||| | | |||||| | |||||| || |||| |||||| || || Sbjct 27 ATCAAACTCGCCATTCTTAATAAACATTGGAAGTGCAATGGAAGCCAAATTACATACTGC 86 Query 53731 TACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGT 53790 ||||||| | | ||||| | ||| || || ||||| || | || || Sbjct 87 CACCTCATCCGGGGAAGTATATTCCAATATTTCCGTACAAAGGTTGGACGAGCGAATAGT 146 Query 53791 TCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGT 53850 |||||||| ||||| || |||||| | || |||||||||||||| || ||||||| Sbjct 147 ACCTAAATTCTGTTGGTTGCTCTTTCTATTGGCGGCATCCTTATAAAGCATATATGGCGT 206 Query 53851 ACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTT 53901 |||||| || || || || || | |||| | ||| | |||| ||||| Sbjct 207 ACCAGTCTCTATTTGTGACTCCAAAATCTTCTCCCAAAGTTCACGGGCCTT 257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592911526248960