Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq44811 107 2e-18 seq19544 93.3 4e-14 seq87644 91.5 1e-13 >seq44811 Length=222 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || |||||||| | || |||||||||||||||||||||||| || || ||| ||||| Sbjct 180 GACAAAGAAGGAATTCCACCAGATCAACAAAGACTTATCTTTGCTGGAAAGCAATTGGAA 121 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 || | |||| | |||| ||||| |||||||||||||||||||| ||| |||| | Sbjct 120 GACGGTAGAACTCTCTCCGACTACAACATTCAGAAGGAATCTACTCTCCACTTGGTCCTC 61 Query 29175 CGATTACGAGGAGG 29188 || | ||||||| Sbjct 60 AGACTTAGAGGAGG 47 >seq19544 Length=280 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 28958 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 29017 ||| ||||| || || | || || ||||| || || ||||||||| || |||| Sbjct 280 AAATATGCAGATCTTTGTAAAGACCTTGACTGGAAAGACCATTACCCTTGACGTCGAACA 221 Query 29018 CGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 29077 | || || | | || | ||| || ||| ||||| |||||| | || ||| Sbjct 220 ATCCGATACTATTGATAATGTAAAGACTAAGATTCAAGATAAGGAAGGTATCCCACCAGA 161 Query 29078 TCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTA 29137 |||||||||| | |||||||| || || ||| | |||||| | ||| | | ||||| Sbjct 160 TCAACAAAGATTGATCTTTGCAGGAAAGCAATTAGAAGATGGAAGAACCTTATCTGATTA 101 Query 29138 CAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||| |||||||| || |||||||| |||| | || | ||||||| Sbjct 100 CAATATCCAGAAGGAGTCCACTCTTCATTTGGTACTTAGACTTAGAGGAGG 50 >seq87644 Length=678 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 29046 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 29105 |||||| ||||||||||| | || ||||||||||||| | |||||||| || || Sbjct 234 AAAATTCAAGATAAAGAAGGAATTCCTCCAGATCAACAAAGATTAATCTTTGCCGGAAAG 293 Query 29106 CAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 29165 ||| | |||||| | ||| | | || |||||||||||||| |||||||| ||||| Sbjct 294 CAATTAGAAGATGGAAGAACCTTATCTGACTACAATATTCAGAAAGAATCTACCCTTCAT 353 Query 29166 ATGGTGTTACGATTACGAGGAGG 29188 | || | ||||| |||| || Sbjct 354 CTCGTCCTCAGATTAAGAGGTGG 376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427766188902560