Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq70280 129 4e-25 >seq70280 Length=1721 Score = 129 bits (142), Expect = 4e-25 Identities = 278/409 (68%), Gaps = 25/409 (6%) Strand=Plus/Plus Query 97072 TGAGCATCTCCTAAAGTGTGAATAAATTCTCC-------AGGAACTAAATCAGTGACATG 97124 ||||| ||||||||||||||||| ||||| || ||| ||||| || Sbjct 251 TGAGCGTCTCCTAAAGTGTGAATGAATTCACCTCTTTCAAGGCCTCAAATC-------TG 303 Query 97125 GGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCAT 97184 || ||||| || || | |||| ||| ||||| || || || || || ||||| || || Sbjct 304 AGCAATCATGCAGGTGAGTAGACTATAACTAGCTATATTGAATGGTACTCCTAGACCAAT 363 Query 97185 ATCAGCTGATCTTTGATATAACTGACAGGA-AAGCT--TTCCATCACACACATAAAACTG 97241 |||| |||||||| | ||||||||| || || || | | ||||| ||||| Sbjct 364 ATCACAACTCCTTTGATACATCTGACAGGATAATCTATTTTTAGTATCAACATAGAACTG 423 Query 97242 ACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACA 97301 | | | ||| || || || | ||||| || | || |||||||| ||| Sbjct 424 GCAGATGATATGGCAAGGTGGTAGAGCCATCTTCTTTAAGTCAGCAACATTCCATGCATT 483 Query 97302 CATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATT-AATTATCTGCTTTAATT 97360 | | ||||||| | |||||| || | | | ||| || ||| || | ||| | || Sbjct 484 AAGAATAATTCTTCGACTGGTTGGATTC-TCTTTGAGGTCTTTAATAATATTCTTAATTT 542 Query 97361 GATCAACGCCTTCTCCACCATA---ATTGTGCTTAAGACCTTGATATTCTGCTCCAAAAT 97417 |||| || |||| ||| |||| || ||| || ||| |||||| |||||||| | Sbjct 543 GATCGACTCCTTGTCCTTCATAGTCATCATGCATAGT--CTT-ATATTCAGCTCCAAAGT 599 Query 97418 GCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATC 97466 | ||||||||||| ||||| || |||||||| || ||||||||||| || Sbjct 600 GTCTCCATTGGAAACCATATACTGGTCCAAGATCACCTTCTTCTCTTTC 648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346322676712640