Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq108602 145 1e-29 seq70280 138 2e-27 seq19544 134 2e-26 seq80117 125 1e-23 seq80021 111 2e-19 seq87644 109 8e-19 seq44811 91.5 2e-13 seq14831 89.7 8e-13 >seq108602 Length=371 Score = 145 bits (160), Expect = 1e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | ||||| || || || ||||| || || |||| ||||| | Sbjct 348 AATGCAGATCTTTGTTAAGACTCTTACTGGAAAAACCATCACCTTAGATGTTGAACAATC 289 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || || ||| | || || |||||||||||||| || || ||||| || || Sbjct 288 TGACACCATCGACAATGTCAAGACTAAGATTCAAGATAAAGAGGGAATTCCACCAGACCA 229 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| || ||||| ||||| |||||||||||||| || || |||| || ||||||||| Sbjct 228 ACAGAGACTTATCTTTGCTGGAAAACAATTAGAAGACGGTAGAACTCTATCAGATTATAA 169 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGT 124747 |||||||||||||| ||| | |||||||| Sbjct 168 CATTCAAAAAGAATCTACTCTCCATTTGGT 139 >seq70280 Length=1721 Score = 138 bits (152), Expect = 2e-27 Identities = 356/528 (67%), Gaps = 16/528 (3%) Strand=Plus/Plus Query 205328 TTAATTTTGGAAATGGGTTTGGTGTACGT-TCTAATTGtttttttAATCCATTAATATGA 205386 |||||| ||| || || ||||| ||| | | ||| ||| |||| | | || | |||| Sbjct 180 TTAATTGTGGGAAAGGATTTGGA-TACCTCTTTAACTGTCTTTTAAGTGGCTTCACATGA 238 Query 205387 TTAACATATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTTAAATTAGTT 205446 || |||| ||| || | || | | | ||||| |||||| | ||| || | Sbjct 239 TTTTTGTATACATGAGCGTCTCCTAAAGTGTGAATGAATTCACCTC--TTTCAAGGCCTC 296 Query 205447 AAATGTG--CAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACCTA 205504 |||| || ||||||| | || | || |||||||||||| | ||| |||||||| |||| Sbjct 297 AAATCTGAGCAATCATGCAGGTGAGTAGACTATAACTAGCTATATTGAATGGTACTCCTA 356 Query 205505 AACCCATATCAGCTGATCTTTGATACATTTGACATG-TAAGATATTTATTATTAATTACA 205563 ||| |||||| ||||||||||| ||||| | ||| ||||| ||| || ||| Sbjct 357 GACCAATATCACAACTCCTTTGATACATCTGACAGGATAATCTATTT-TTAGTATCAACA 415 Query 205564 TGAAATTGTACAAAACA-ATGACAAGGTGGTATAACCATATTTTCAACATCTATAGGATT 205622 | || || || | | ||| |||||||||| | |||| || | | || | ||| Sbjct 416 TAGAACTGG-CAGATGATATGGCAAGGTGGTAGAGCCATCTTCTTTAAGTCAGCAACATT 474 Query 205623 CCAGGCTGTTAATATTATATTTCTA--GATTCAGGtttattttttattttatttatAATA 205680 ||| || | | || || ||| | | || || || | ||| | | || |||||| Sbjct 475 CCATGCATTAAGAATAATTCTTCGACTGGTT--GGATTCTCTTTGAGGTCTTTAATAATA 532 Query 205681 TGTGTTAATT-GATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGC 205739 | | |||||| |||| | |||||| | ||| | || |||| |||||| ||| Sbjct 533 T-TCTTAATTTGATCGACTCCTTGTCCTTCATAGTCATCATGCATAGTCTTATATTCAGC 591 Query 205740 ACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCATT 205799 ||||| || | |||||| |||||||| ||||| || | ||||||||||| ||| || | Sbjct 592 TCCAAAGTGTCTCCATTGGAAACCATATACTGGTCCAAGATCACCTTCTTCTCTTTCTGT 651 Query 205800 AAAACCACGtttttttATATATTTTAATGATCCATTTTCATCCCAAAT 205847 ||| ||| || | | | ||| | ||| || || ||||||| || Sbjct 652 AAATCCATTGTTATCAAGAAATTCTCTTGAGCCGTTACCATCCCAGAT 699 >seq19544 Length=280 Score = 134 bits (148), Expect = 2e-26 Identities = 196/271 (72%), Gaps = 6/271 (2%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| ||||||| | || || || || || || | || | ||| | Sbjct 276 ATGCAGATCTTTGTAAAGACCTTGACTGGAAAGACCATTACCCTTGACGTCGAACAATCC 217 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| |||| |||| || ||||||||||| |||||||| ||||| |||||| Sbjct 216 GATACTATTGATAATGTAAAGACTAAGATTCAAGATAAGGAAGGTATCCCACCAGATCAA 157 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | || ||||||||||| |||||||| ||| | |||| ||| ||||| ||| Sbjct 156 CAAAGATTGATCTTTGCAGGAAAGCAATTAGAAGATGGAAGAACCTTATCTGATTACAAT 97 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGT-TTTACGTTTACGAGGTGGTAT-TAAAAATT 124776 || || || || || ||| | |||||||| ||| ||| |||| || || ||| || Sbjct 96 ATCCAGAAGGAGTCCACTCTTCATTTGGTACTTAGACTTA-GAGGAGGAATGCAAATCTT 38 Query 124777 CATAAAAA--TTGATTGTAAATAAATATCAC 124805 | |||||| |||| || ||| || ||| || Sbjct 37 CGTAAAAACCTTGACTGGAAA-AACTATTAC 8 >seq80117 Length=1002 Score = 125 bits (138), Expect = 1e-23 Identities = 114/144 (79%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 124554 AAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAAT 124613 |||||||| ||||||||||| | | ||| ||||| | | ||||| ||||| || Sbjct 505 AAGACACTTACAGGCAAAACACTCAATATTGAGATGCTAAGTAGCGATACTATTTCGGAT 446 Query 124614 TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTT 124673 |||||| || |||||||||| ||||| || ||||| ||||||||||| ||||| ||| Sbjct 445 TTAAAAATAAATATTCAAGATATGGAAGGAATTCCACCAGATCAACAAAGACTTATATTT 386 Query 124674 GCAGGAAAACAATTAGAGGATAGT 124697 | ||||||||||||||| |||||| Sbjct 385 GGAGGAAAACAATTAGAAGATAGT 362 >seq80021 Length=1005 Score = 111 bits (122), Expect = 2e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 124552 TAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTA 124611 |||||||||| ||||||||||| | | ||| ||||| | | ||||| ||||| Sbjct 513 TAAAGACACTTACAGGCAAAACACTCAATATTGAGATGCTAAGTAGCGATACTATTTCGG 454 Query 124612 ATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTT 124671 |||||| | || |||||||||| ||| | || ||| |||||||||||| ||||| | Sbjct 453 ATTTAATAATAAATATTCAAGATATGGAAAGAATTTCACTTGATCAACAAAGACTTATAT 394 Query 124672 TTGCAGGAAAACAATTAGAGGATAGT 124697 ||| ||||||||| ||||| |||||| Sbjct 393 TTGAAGGAAAACATTTAGAAGATAGT 368 >seq87644 Length=678 Score = 109 bits (120), Expect = 8e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 |||||||||||||||||||| || || || ||||||||||| | || ||||| ||||| Sbjct 234 AAAATTCAAGATAAAGAAGGAATTCCTCCAGATCAACAAAGATTAATCTTTGCCGGAAAG 293 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 |||||||| ||| | |||| ||| || || |||||||| |||||||| || | ||| Sbjct 294 CAATTAGAAGATGGAAGAACCTTATCTGACTACAATATTCAGAAAGAATCTACCCTTCAT 353 Query 124743 TTGGTTTTACGTTTACGAGGTGG 124765 | || | | ||| ||||||| Sbjct 354 CTCGTCCTCAGATTAAGAGGTGG 376 >seq44811 Length=222 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || ||||| || |||||||| || ||||| ||||||||||| ||||| ||||| ||||| Sbjct 189 AAGATTCAGGACAAAGAAGGAATTCCACCAGATCAACAAAGACTTATCTTTGCTGGAAAG 130 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 ||||| || || || |||| | || || || ||||| || ||||| ||| | || Sbjct 129 CAATTGGAAGACGGTAGAACTCTCTCCGACTACAACATTCAGAAGGAATCTACTCTCCAC 70 Query 124743 TTGGT 124747 ||||| Sbjct 69 TTGGT 65 >seq14831 Length=294 Score = 89.7 bits (98), Expect = 8e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 ||||||||||| |||||||| || || || || ||||| || || || |||||||||||| Sbjct 21 AAAATTCAAGACAAAGAAGGCATCCCTCCAGACCAACAGAGACTGATCTTTGCAGGAAAA 80 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACT 124736 | || ||| | |||| |||| ||| || ||||| |||||||| || ||| Sbjct 81 TGCCTTGAAGATGGAAGAACCTTAGCAGACTACAATATCCAAAAAGAGTCTACT 134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754425255833600