Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq108602 136 6e-27 seq19544 120 5e-22 seq87644 116 5e-21 seq44811 111 2e-19 seq56753 87.8 3e-12 >seq108602 Length=371 Score = 136 bits (150), Expect = 6e-27 Identities = 113/138 (82%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGA 146109 ||| ||||||||||| | |||||||| | |||||||||||| || ||||||||||| Sbjct 120 TCCTCCTCTAAGTCTGAGGACCAAATGGAGAGTAGATTCTTTTTGAATGTTATAATCTGA 179 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 |||||||| | || |||||||||||||||||||| || | ||| || || || || || Sbjct 180 TAGAGTTCTACCGTCTTCTAATTGTTTTCCAGCAAAGATAAGTCTCTGTTGGTCTGGTGG 239 Query 146170 AATTCCTTCTTTATCTTG 146187 |||||| ||||||||||| Sbjct 240 AATTCCCTCTTTATCTTG 257 >seq19544 Length=280 Score = 120 bits (132), Expect = 5e-22 Identities = 110/139 (79%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| ||||||||||| | ||||||||| | ||| || || || ||||| ||||| | Sbjct 48 TTCCTCCTCTAAGTCTAAGTACCAAATGAAGAGTGGACTCCTTCTGGATATTGTAATCAG 107 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | ||||| | ||| |||||||| ||||| ||||| ||||||||||| ||||| || | Sbjct 108 ATAAGGTTCTTCCATCTTCTAATTGCTTTCCTGCAAAGATCAATCTTTGTTGATCTGGTG 167 Query 146169 GAATTCCTTCTTTATCTTG 146187 | || ||||| |||||||| Sbjct 168 GGATACCTTCCTTATCTTG 186 >seq87644 Length=678 Score = 116 bits (128), Expect = 5e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||| | || | ||| | ||||||||||| ||||| || || || Sbjct 376 CCACCTCTTAATCTGAGGACGAGATGAAGGGTAGATTCTTTCTGAATATTGTAGTCAGAT 317 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||| | ||| |||||||| ||||| ||||| || |||||||| ||||| |||||| Sbjct 316 AAGGTTCTTCCATCTTCTAATTGCTTTCCGGCAAAGATTAATCTTTGTTGATCTGGAGGA 257 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||||||||||||||| Sbjct 256 ATTCCTTCTTTATCTTG 240 >seq44811 Length=222 Score = 111 bits (122), Expect = 2e-19 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| ||||||||||| | ||||| || | ||||||||| || || || || || | Sbjct 45 TTCCTCCTCTAAGTCTGAGGACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGG 104 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | |||||||| | || || ||||| ||||||||||| || | |||||| ||||| || | Sbjct 105 AGAGAGTTCTACCGTCTTCCAATTGCTTTCCAGCAAAGATAAGTCTTTGTTGATCTGGTG 164 Query 146169 GAATTCCTTCTTTATCTTG 146187 ||||||||||||| || || Sbjct 165 GAATTCCTTCTTTGTCCTG 183 >seq56753 Length=203 Score = 87.8 bits (96), Expect = 3e-12 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 146059 AAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGA-AAGAGTTC 146117 |||||| | | |||||| | ||||||||| || || |||||||| || |||| ||| Sbjct 165 AAGTCTAAGGAGCAAATGAAGAGTAGATTCCTTCTGAATGTTATAATCAGATAAGA-TTC 107 Query 146118 TGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTT 146177 | | ||| || ||||||||||||||||| | | | | || |||| || | |||||||| Sbjct 106 TTCCATCTTCCAATTGTTTTCCAGCAAAGAGGAGTTTCTGATGATTTGGTGAAATTCCTT 47 Query 146178 CTTTATCTTG 146187 |||| ||||| Sbjct 46 CTTTGTCTTG 37 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 742511932579840