Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq59922 347 1e-90 seq75063 163 3e-35 seq81092 86.0 6e-12 >seq59922 Length=6033 Score = 347 bits (384), Expect = 1e-90 Identities = 622/892 (70%), Gaps = 36/892 (4%) Strand=Plus/Minus Query 15943 TTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATT 16002 |||||| ||||||| |||||||||||||||||| || ||||| |||| | |||||| | Sbjct 1148 TTTTTGGTATTCACCAACTCTCTTTTCAAAGAAGTTCGTTTTCCCTTGAATTGAAATCAT 1089 Query 16003 TTCCATAAAATCAAAAGGATTTTTTGAAC--AATAGTATTTATCGCATCCCAATTCCAAC 16060 |||||| |||||||| || ||| | | |||| | ||| || ||| ||||||||| Sbjct 1088 TTCCATGAAATCAAATGGGTTTGTCGCGTTGAATACTTTTT--CGTTTCCTAATTCCAAC 1031 Query 16061 AATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATT 16120 ||||||||||| || ||||| || || || || ||| ||||||| ||||||||| ||| Sbjct 1030 AATAATCTATCAGCAACAAACTCAATGTATTGCGACATCAAATCACTGTTCATTCCGATT 971 Query 16121 AATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATT 16180 || ||||| || | |||||| | ||| | ||| || || | ||| || |||| ||| Sbjct 970 AACTTAACGGGAAGTGCTTCAAGAATAAATTCTTTCTCAATTTCAACTGCGTCAAGGATA 911 Query 16181 ATATCTCTTACTACACTATTT--AACGGAGGGTTTAATAA----GTGTT---TAAACATT 16231 || || || ||| ||| ||| ||||| || ||| | | | | | Sbjct 910 AT-----TTTCTGAACTGTTTCCTTTGGA-AGTTTATCAACGATGTGGTTGGTGTATAAT 857 Query 16232 ATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTA 16291 | ||| || |||||||| |||||||||||||| || ||||||||||| || || | | Sbjct 856 AAACATGCGAAATCACAGTGCAATCCTTCGTCTCTTGAGATTAACTCGTTAGAGAAAGAA 797 Query 16292 AGACCTGGCATTAGTCCTCGTTTTTTAATCCA--AAATATAGCGGCAAATGAACCAGAAA 16349 || |||||||| ||||||| ||| || | ||| |||| | | | || ||||| || | Sbjct 796 AGCCCTGGCATCAGTCCTCTTTTCTTCAACCAGTAAATTGAACAG--AAAGAACCTGAGA 739 Query 16350 AGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttac 16409 |||| || ||||| ||||| ||||||||||| | || || | | | || || | Sbjct 738 AGAAAATTCCTTCCACTGCTGCAAATGCAACAAGTCTTTCTGCAAATGATC---CTTCA- 683 Query 16410 tttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTG 16469 || ||||| |||||||| ||||||| |||||||| | ||| | || || | Sbjct 682 --TCAATCCAACGCAAAGCCCAATCTGCTTTTACCTTAACACATTCCATTGTGTCAATAG 625 Query 16470 CATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTAT 16529 ||||||| ||||| | ||| || || | ||| ||| ||||||||||||| | || Sbjct 624 CATTAAACAAATATTCTTTGTCCTTCGTGTCTTTAATGTAAGTATCTATTAAAAGCGAAT 565 Query 16530 ACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTC-G 16588 || |||| || ||||| || || | ||||| || || || || || || | || || | Sbjct 564 ACGTTTCAGAGTGAATGTTTTCAACTGCTACTTGGAACCCGTAGAAAAATTTTGCCTCAG 505 Query 16589 GATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTA 16648 ||| || ||||| || | || | |||||||||||||| || || |||||||| Sbjct 504 TATA-CTGAACTTCTGACAAGAAATTCTCTGCTAAGTTTTCATTTACAATTCCATCTGAT 446 Query 16649 GCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTT--TA 16706 || || ||||| || | || ||||||| ||||| ||| ||||| || || || Sbjct 445 GCCGCGAAAAAAGCCAATACATGTTTAACAAAATGACGTTCATTATCGTTCAGCTTCGTA 386 Query 16707 -ACCAGTCAGAAAAATC-TTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAAC 16764 ||| ||| || || |||| | ||| | |||||| | ||||| ||| ||| | Sbjct 385 TCCCAATCAATTAAGTCGGCTTGA-AGATCAATCTCTTCGGCTGTCCAGAAACTAGCTTC 327 Query 16765 AGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACACAACA 16816 |||||||| || | ||| ||||| |||| ||| ||||| | |||| Sbjct 326 GGCCTTTTTGTAGAAAGCCCAAATGTCATCGTGTTGAATTGGAAATAGAACA 275 >seq75063 Length=1318 Score = 163 bits (180), Expect = 3e-35 Identities = 572/881 (65%), Gaps = 18/881 (2%) Strand=Plus/Plus Query 15926 TTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTT 15985 ||||||||||| ||||||||| ||||| ||| | |||| |||||||| |||||| Sbjct 96 TTTGACATAACCCCTGCTTTTTGATACTCACTTACTTTTCTTTCGAAGAAATTAGTTTTT 155 Query 15986 CCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCG 16045 |||| | |||||| | ||||| | || || ||||| || | ||| || | | Sbjct 156 CCTTGAAGTGAAATCATGTCCATCCATTCGAATGGATTAACTGCATTGAAGTGCTT-TGG 214 Query 16046 CATCCCAATTCCAACAATAA-TCTATCCGCCACAAATTCTATATACTGTTTCATTAAATC 16104 | |||| || | || |||||| || ||||| || ||||| ||| ||| | | Sbjct 215 TACTCCAAGAGTAAAGAGAAGTCTATCAGCAACAAACTCAATATATTGTCCCATAAGTTT 274 Query 16105 ACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATT 16164 | ||||| || || | || || || | | ||| | || ||| | || || Sbjct 275 GCTATTCATACCAATAAGTTCTACGGGCAAAGATTCAGATACAAATTCAAGCTCAATTGC 334 Query 16165 AACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTTTAATAAG----T 16220 || |||||| | | | || || || | || || | || ||| ||| | Sbjct 335 TACTGCTTCAGTCA--AAATTTCATAA-ATTCT-TTCATTTGATACCTTATTAACCATAT 390 Query 16221 GTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGT 16280 ||||| ||| | ||||||||| ||| ||| ||||| || || || || ||||| | Sbjct 391 GTTTATACAACAAACAAGCAAAGTCAGTATGTAATCCCTCATCTCTTGAGATCAACTCAT 450 Query 16281 TTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATG 16340 | || || ||| |||||||| || || ||||| | ||| || || ||| ||| | Sbjct 451 TAGAGAAACAAAGGCCTGGCATAAGAGATCTCTTTTTCAACCAGAAAATTGCGCAAAAAG 510 Query 16341 AACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTC 16400 | ||||| ||||| || ||||| || ||||| |||| ||||| ||| | | | Sbjct 511 ACCCAGAGAAGAAAATTCCTTCTACACAAGCAAACGCAATCAATCTTTCAGCAAATGAGT 570 Query 16401 TAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGT 16460 ||| ||| | |||||||| |||||| | || || | |||||| | || | Sbjct 571 CATTCTTATTA---ATCCATTTAAAAGCCCAGTCAGCCTTCTTCTTAACAGTTTCAATAT 627 Query 16461 TCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTA 16520 | || || || ||||| | ||| |||||||||| ||| |||||||||||| || | Sbjct 628 TATCAATAGCCTTAAAAAGGAAATCTTTTTCTTTGAGATCACTAATATAAGTATCAATAA 687 Query 16521 GTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATC 16580 | | | || |||| |||| ||||||||| | || || ||||| ||||||| Sbjct 688 GGAGAGAGTAAGTTTCACTGTGAACATTCTCCATCATACTTTGGAAGCCATAGAAGCATC 747 Query 16581 TAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAG-TTTTCGTTAACTATT 16639 || |||| | ||||||||||||| || | ||| |||| || || || ||| Sbjct 748 TAACTTCAGGGATTTGTACTTCAGCAGCGAAGCATTC-AATAAGATTCTCAAGGACAATT 806 Query 16640 CCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATC-TGA 16698 ||||| ||| || || || ||||| | || ||| || || | | | || | ||| | Sbjct 807 CCATCAGAAGCAGCGAAGAAAGCAAGCACGTATTTGATGAAGTGTCTCTCATCATCATTT 866 Query 16699 AAGTTTTAA--CCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAA 16756 || || | | ||| || |||||| | ||||| | |||||| | |||||| Sbjct 867 AATTTATCATTCCAATCTTTTAAATCTGAAGCCAAATCTATCTCTTCAGCTACCCAAAAG 926 Query 16757 GAAGCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTA 16797 | || |||||| ||||||| ||| | ||| | ||| Sbjct 927 CATGCTTGTTGCTTTTTGTACATTTCCCAAACGTCGTGGTA 967 >seq81092 Length=944 Score = 86.0 bits (94), Expect = 6e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 58103 TGATGTAATAGGAATAGACGAAGGACAATTTTTTCCAGATATTGTAGAATTTTGCGAACG 58162 |||| |||| ||||| || |||||||| || ||| ||| |||| || || || ||| Sbjct 620 TGATATAATTGGAATTGATGAAGGACAGTTCTTTGAAGACCTTGTGGAGTTCTGAGAAGA 561 Query 58163 TATGGCAAACGATGGAAAAATTGTAATAGTTGCTGCTTTAGACGGTACATTTTTAAGAGA 58222 ||||| || ||||| |||| || || ||||| ||||||||||| ||| ||| | Sbjct 560 AATGGCTAATAGAGGAAAGCTTGTTATTGTAGCTGCATTAGACGGTACTTTTGAGAGAAA 501 Query 58223 GCCATTTGGAAATATTTTAAAATTAATACC 58252 |||||| ||| | ||| ||||||| || Sbjct 500 GCCATTCGGACGAGTCTTAGAATTAATCCC 471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461880948627200