Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq70280 178 1e-39 >seq70280 Length=1721 Score = 178 bits (196), Expect = 1e-39 Identities = 452/675 (67%), Gaps = 16/675 (2%) Strand=Plus/Minus Query 20056 ACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTATTATGGTTTATTAAAGGA 20115 ||||| ||| |||| ||||| || ||||| |||||| | |||||||| ||| ||| Sbjct 799 ACTACTAAAGACGTATACTGGAAGGGAGTTGTAGAAGAGCTCTTATGGTTCCTTAGAGGG 740 Query 20116 TCAACAAATTCTACCGAGCTTG---TAGAAAAAGGAGTTAAGATTTGGAGCGCACATGGA 20172 ||||||||| || | | || | |||| | |||||| || ||| | | || Sbjct 739 GAAACAAATTCAACA-ACCCTGAGTTTGAAATAA-AGTTAAAATCTGGGATGGTAACGGC 682 Query 20173 TCTAAGCAATTTTTACACAGCAATGGATTTGACA-ACCGTCAAGAGGGGGATTTGGGTCC 20231 || | ||||| | | | |||||||||| ||| | | |||| || ||| | || || Sbjct 681 TCAAGAGAATTTCTTGATAACAATGGATTT-ACAGAAAGAGAAGAAGGTGATCTTGGACC 623 Query 20232 TGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGAC-ATGAACACAAATT 20290 || ||||| || ||||||||||| ||||||||||||||| ||| ||| | | | Sbjct 622 AGTATATGGTTTCCAATGGAGACACTTTGGAGCTGAATAT-AAGACTATGCATGATGACT 564 Query 20291 ATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATTAAAACGAACCCAA 20350 || ||||||||||| |||||| | | ||| ||||||| | ||| ||| |||| Sbjct 563 ATGAAGGACAAGGAGTCGATCAAATTAAGAATATTATTAAAGACCTCAAAGAGAATCCAA 504 Query 20351 ACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTTTAATGGCTTTGC 20410 | ||||||||||| | || ||||| | | || | |||||| | | Sbjct 503 CCAGTCGAAGAATTATTCTTAATGCATGGAATGTTGCTGACTTAAAGAAGATGGCTCTAC 444 Query 20411 CTCCATGTCATATGCTATGCCAATTTTACGTTG---CTAATAATGAATTGTCGTGTCAAA 20467 | || || ||||| | ||||| || || |||| |||| ||| ||| || ||||| | Sbjct 443 CACCTTGCCATATCATCTGCCAGTTCTATGTTGATACTAAAAATAGATTATCCTGTCAGA 384 Query 20468 TGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGC 20527 |||||||| | |||||| || || || || || |||||||| || |||||| | Sbjct 383 TGTATCAAAGGAGTTGTGATATTGGTCTAGGAGTACCATTCAATATAGCTAGTTATAGTC 324 Query 20528 TGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACTTAGTCCACACCA 20587 | || || | |||||||| || || || | ||| ||||| || | ||||| Sbjct 323 TACTCACCTGCATGATTGCTCAGATTTGAGGCCTTGAAAGAGGTGAATTCATTCACACTT 264 Query 20588 TAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAATTACAGTTAACACGAC 20647 |||||||||| ||| | ||| |||||| | | || | ||| |||||||| | Sbjct 263 TAGGAGACGCTCATGTATACAAAAATCATGTGAAGCCACTTAAAAGACAGTTAAAGAGGT 204 Query 20648 AACCAAAACAATTCCCA-ACTCTTCGCATT-ACTCGAACTGTTAAAGATATTAACGATTT 20705 | ||||| | |||||| | | || || | ||| | ||||||||| | ||||| Sbjct 203 ATCCAAATCCTTTCCCACAATTAACGATTTCAAAGGAA--ATAAAAGATATTGAAGATTT 146 Query 20706 TAAAGCTGATGATTT 20720 |||| ||| ||||| Sbjct 145 TAAATTTGAAGATTT 131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398652969516640