Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq59922 111 3e-19 >seq59922 Length=6033 Score = 111 bits (122), Expect = 3e-19 Identities = 412/640 (64%), Gaps = 7/640 (1%) Strand=Plus/Plus Query 248800 TACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTC 248859 |||| | |||||| ||||| | |||| ||| |||||| || | ||||| || Sbjct 1660 TACGATAGAGATTTTAGATACGACTATTTTGGTTTTAAAACGTTGACGCGCTCGTACCTA 1719 Query 248860 CTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTC 248919 | ||| | | || | ||| | ||||| || || ||||||||||| || |||| Sbjct 1720 ATGAAATTGAACGGAATGATTGCAGAACGCCCACAACAAATGTTGATGCGTGTTTCTGTT 1779 Query 248920 GGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGC 248979 || |||||||| | || || || | | |||| |||| | |||| ||| | Sbjct 1780 GGAATTCACAAAAAAGATATCGACTCTGCAATTAAGACATACAACTTAATGTCAGAAGGA 1839 Query 248980 TGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAACAAT-CAGCTGAG 249038 ||| | ||||| || ||||| ||| | || ||| | || || | ||| | || || Sbjct 1840 TGGTTCACACACGCAACACCAACGTTGTTTAACTCTGGAAC-GCCAAAACCACAAATGTC 1898 Query 249039 CTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAA 249098 || || || ||| | | ||| | || || | | || || ||||||||||| | || Sbjct 1899 ATCTTGTTTCCTTTTAACAATGAAGGAAGATAGTATTGAAGGAATTTATGACACATTAAA 1958 Query 249099 ACAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCG 249158 ||| || |||| ||| ||| || || ||||| || | | | ||||||||| Sbjct 1959 ACAATGTGCTCAGATCTCTCAATCAGCTGGTGGAATTGGATTGGCTATGCACAACATCCG 2018 Query 249159 AGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCT 249218 |||| ||||| ||||||||||| ||||| || | | | |||||||| || | | Sbjct 2019 TGCGACAGGTTCATACATCAAAGGAACAAACGGTGCTTCTAACGGTATCGTTCCAATGTT 2078 Query 249219 TCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCG---CCGAAAGGGGTC 249275 || ||| | || || || | | | | || | || | || || || || Sbjct 2079 AAGAGTATTTAACGATACTGCTAGATACGTAGATCAAGGTGGAGGAAAACGTAAAGGTTC 2138 Query 249276 GTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAA 249335 ||||| ||||| ||||| ||||| || ||| |||| || ||| | |||||||| || Sbjct 2139 TTTCGCAATGTACTTGGAGCCTTGGCATGCTGATGTATTTGACTTCTTAGACTTGAAGAA 2198 Query 249336 GAACAACGGCAACG-AGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCG 249394 || |||| || | || || ||||| | || | || |||| ||||||| | | Sbjct 2199 AAATCACGGTAAAGAAGAGCA-AAGAGCAAGAGATTTATTTTACGCTTTGTGGGTTCCAG 2257 Query 249395 ACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGAC 249434 | || ||||||| || || || | | || || ||||| Sbjct 2258 ATTTATTCATGCAACGTGTGAAAGAAAATGGAGAGTGGAC 2297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1072264726951936