Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq59922 311 8e-80 seq75063 163 3e-35 >seq59922 Length=6033 Score = 311 bits (344), Expect = 8e-80 Identities = 607/892 (68%), Gaps = 26/892 (3%) Strand=Plus/Minus Query 13912 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13971 |||||| ||||||| |||||| |||||||||||||| ||||| |||| | ||| || | Sbjct 1148 TTTTTGGTATTCACCAACTCTCTTTTCAAAGAAGTTCGTTTTCCCTTGAATTGAAATCAT 1089 Query 13972 TTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAG 14031 |||||| ||||||||||| ||||| | | || ||||| || |||| ||| || | Sbjct 1088 TTCCATGAAATCAAATGGGTTTGTCGCGTTGAATACTTTTTCGTTTCCTAATTCCAACAA 1029 Query 14032 TAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 14091 ||||||||| |||| |||||||| ||||| ||||| ||||||| ||||| || |||| Sbjct 1028 TAATCTATCAGCAACAAACTCAATGTATTGCGACATCAAATCACTGTTCATTCCGATTAA 969 Query 14092 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 14151 || || |||| | | | ||||||||| || || || || || ||||| Sbjct 968 CTTAACGGGAAGTGCTTCAAGAATAAATTCTTTCTCAATTTCAACTGCGTCAAGGATAAT 909 Query 14152 AATCGTAATAATTTCATTAGAAGG-------AGGATATTTTAGATGTTTAAAAATTAAAC 14204 || || |||| || | | | | ||| | | | ||| ||| ||||| Sbjct 908 TTTCTGAACTGTTTCCTTTGGAAGTTTATCAACGATGTGGTTGGTGTATAA----TAAAC 853 Query 14205 ACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATC 14264 | || |||||||| || | || || ||||| || | ||||| || || | | | Sbjct 852 ATGCGAAATCACAGTGCAATCCTTCGTCTCTTGAGATTAACTCGTTAGAGAAAGAAAGCC 793 Query 14265 CTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATA 14324 ||||||||| ||||| ||| || ||||| | |||| | ||| || || || ||||| | Sbjct 792 CTGGCATCAGTCCTCTTTTCTTCAACCAGTAAATTGAACAGAAAGAACCTGAGAAGAAAA 733 Query 14325 TTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATA 14384 |||| || ||||| ||||| || | | || |||| |||| ||| ||| | || | Sbjct 732 TTCCTTCCACTGCTGCAAATGCAACAAGTCTTTCTGCAAATGATCCTTCATCAATCCAAC 673 Query 14385 TCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAA 14444 | | |||||| || | |||| |||| | | |||||||| ||||||||||||| Sbjct 672 GCAA------AGCCCAATCTGCTTTTACCTTAACACATTCCATTGTGTCAATAGCATTAA 619 Query 14445 ATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGC-TATACATT 14503 | |||| ||| || || || || | |||||| ||||| || | |||| |||| || Sbjct 618 ACAAATATTCTTTGTCCTTCGTGTCTTTAATGTAAGTATCTATTA-AAAGCGAATACGTT 560 Query 14504 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCAT 14563 |||||||| |||||||| | |||| || || || || ||| || | || || | | Sbjct 559 TCAGAGTGAATGTTTTCAACTGCTACTTGGAACCCGTAGAAAAATTTTGCCTCAGTATAC 500 Query 14564 TGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCA 14623 || || ||||| | || | || || || |||||||| || || ||||| || || Sbjct 499 TGAACTTCTGACAAGAAATTCTCTGCTAAGTTTTCATTTACAATTCCATCTGATGCCGCG 440 Query 14624 AAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTT---TTTTCCAA 14680 ||||| ||||||| | ||||| ||| | | || | || | | || | | | |||| Sbjct 439 AAAAAAGCCAATACATGTTTAACAAAATGACGTTCATTATCGTTCAGCTTCGTATCCCAA 380 Query 14681 TCGGCTAAATC--CTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTT 14738 || ||| || ||| |||||| | || || ||||||| |||||||| | || | Sbjct 379 TCAATTAAGTCGGCTT--GAAGATCAATCTCTTCGGCTGTCCAGAAACTAGCTTCGGCCT 322 Query 14739 TTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCT 14790 |||| || | |||| || || | | | || ||||| | |||||||| Sbjct 321 TTTTGTAGAAAGCCCAAATGTCATCGTGTTGAATTGGAAATAGAACAAATCT 270 >seq75063 Length=1318 Score = 163 bits (180), Expect = 3e-35 Identities = 589/908 (65%), Gaps = 24/908 (3%) Strand=Plus/Plus Query 13895 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTA 13954 || || ||||| || ||||||||| ||||| ||| || |||| ||||| |||||||| Sbjct 96 TTTGACATAACCCCTGCTTTTTGATACTCACTTACTTTTCTTTCGAAGAAATTAGTTTTT 155 Query 13955 CCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACAT--AAACACTTTAT 14012 |||| ||||| || | ||||| | || |||||||| || ||| || |||| Sbjct 156 CCTTGAAGTGAAATCATGTCCATCCATTCGAATGGATTAACTG-CATTGAAGTGCTTTGG 214 Query 14013 CACAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAAT 14072 || || || || || | |||||| |||| |||||||||||||| ||| | | Sbjct 215 TACT-CCAAGAGTAAAGAGAAGTCTATCAGCAACAAACTCAATATATTGTCCCATAAGTT 273 Query 14073 CACAATTCATACCTATTAGTTTTACAGGAATTATATTG-GTTAAAAATTCTTTTTCTATA 14131 | ||||||||| || |||| ||| || | | ||| | || |||||| || || Sbjct 274 TGCTATTCATACCAATAAGTTCTACGGGCAA-AGATTCAGATACAAATTCAAGCTCAATT 332 Query 14132 GACACAGCCTCGTTTATAATAATCGTAA-TAATTTCATTAGAAGGAGGATATTTT--AGA 14188 | || || || | | ||| || ||| | ||||||| || | |||| | | Sbjct 333 GCTACTGCTTCAGTCAAAATT-TCATAAATTCTTTCATTTGAT--ACCTTATTAACCATA 389 Query 14189 TGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCG 14248 |||||| | | ||||| ||||| ||| ||| | ||||||||||| || | || Sbjct 390 TGTTTATACAACAAACAAGCAAAGTCAGTATGTAATCCCTCATCTCTTGAGATCAACTCA 449 Query 14249 TTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAAT 14308 || || || | |||||||| | || ||||| ||||| || ||||| || Sbjct 450 TTAGAGAAACAAAGGCCTGGCATAAGAGATCTCTTTTTCAACCAGAAAATTGCGCAAAAA 509 Query 14309 GATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGAT 14368 || || || ||||| ||||| || || ||||||||| || |||| ||| |||| || Sbjct 510 GACCCAGAGAAGAAAATTCCTTCTACACAAGCAAACGCAATCAATCTTTCAGCAAATGAG 569 Query 14369 GCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATT 14428 | || || || |||||||| |||||| |||| || || |||| | || || Sbjct 570 TCATTCTTATT---AATCCATTTAAAAGCCCAGTCAGCCTTCTTCTTAACAGTTTCAATA 626 Query 14429 GTTTCAATAGCATTAAATAAATGTTCCTTCTCTTT---AGTACTTGAAATGTATGTATCA 14485 | |||||||| ||||| | || || ||||| | ||| ||| || |||||| Sbjct 627 TTATCAATAGCCTTAAAAAGGAAATCTTTTTCTTTGAGATCACT---AATATAAGTATCA 683 Query 14486 ATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAA 14545 ||||| | || ||||| ||| | || ||||| | || || ||||| || Sbjct 684 ATAAGGAGAGAGTAAGTTTCACTGTGAACATTCTCCATCATACTTTGGAAGCCATAGAAG 743 Query 14546 CATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACT 14605 |||||| |||| | |||||| || | || | ||| | ||| ||| || Sbjct 744 CATCTAACTTCAGGGATTTGTACTTCAGCAGCGAAGCATTCAATAAGATTCTCAAGGACA 803 Query 14606 ATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTG 14665 || |||||| ||| || || || || | | || ||| || |||| | ||| |||| Sbjct 804 ATTCCATCAGAAGCAGCGAAGAAAGCAAGCACGTATTTGATGAAGTGTCTCTCATCATCA 863 Query 14666 CTGAGTTT---TTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAA 14722 | | ||| |||||||| |||||| || | ||||| || ||| || |||| Sbjct 864 TTTAATTTATCATTCCAATCTTTTAAATCTGAAGCCAAATCTATCTCTTCAGCTACCCAA 923 Query 14723 AAACTAGCAACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACT 14782 || | || ||||| |||||| |||| | || | ||| || || |||| Sbjct 924 AAGCATGCTTGTTGCTTTTTGTACATTTCCCAAACGTCGTGGTATTGGATTGGGAAAAGA 983 Query 14783 ACAAATCT 14790 || ||||| Sbjct 984 ACGAATCT 991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481687487663360