Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq59922 194 1e-44 seq108602 125 6e-24 seq97248 114 1e-20 >seq59922 Length=6033 Score = 194 bits (214), Expect = 1e-44 Identities = 592/897 (66%), Gaps = 36/897 (4%) Strand=Plus/Plus Query 57537 AGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAA 57596 |||||||| | ||||| ||| || | ||||||||| | ||||||||||| ||| Sbjct 270 AGATTTGTTCTATTTCCAATTCAACACGATGACATTTGGGCTTTCTACAAAAAGGCCGAA 329 Query 57597 GCATCGTTT-TGGACCGTCGAAGAAGTAGACCTGTCTAAG--GATCTGAGCGATTGGGAT 57653 || | |||| ||||| | |||||| | || || || ||| || | | ||||||||| Sbjct 330 GC-TAGTTTCTGGACAGCCGAAGAGATTGATCT-TC-AAGCCGACTTAATTGATTGGGAT 386 Query 57654 TC---CCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCA 57710 | || || || ||| | ||||| ||||||| || ||||| |||||||| ||| Sbjct 387 ACGAAGCTGAACGATAATGAACGTCATTTTGTTAAACATGTATTGGCTTTTTTCGCGGCA 446 Query 57711 TCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACG 57770 || ||||| ||||| || || || || | || | || | |||||| || || Sbjct 447 TCAGATGGAATTGTAAATGAAAACTTAGCAGAGAATTTCTTGTCAGAAGTTCAGTATACT 506 Query 57771 GAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTAT 57830 ||||| | || || ||||| || ||||| || |||||||| | || || |||| |||| Sbjct 507 GAGGCAAAATTTTTCTACGGGTTCCAAGTAGCAGTTGAAAACATTCACTCTGAAACGTAT 566 Query 57831 TCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGA-CTGTTCAACGC 57889 ||||| | || ||||| ||| | || ||| |||| | || | | | |||| || || Sbjct 567 TCGCTTTTAATAGATACTTACATTAAAGAC-ACGAAGGACAAAGAATATTTGTTTAATGC 625 Query 57890 GATCGAAACAATGCCCGCGATCGCCAAG---AAGGCAGAGTGGTCAATCAAATGGAT--A 57944 || || |||||| | | ||| || ||||| ||| | | ||||| | Sbjct 626 TATTGACACAATG---GAATGTGTTAAGGTAAAAGCAGATTGGGCTTTGCGTTGGATTGA 682 Query 57945 AAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATA 58004 ||| || || || || || || | || || || || || ||||| || Sbjct 683 TGAAGGATCA--------TTTGCAGAAAGACTTGTTGCATTTGCAGCAGTGGAAGGAATT 734 Query 58005 TTCTTTTCGGGCAGCTTTGCG-GCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGG 58063 ||||| || || |||| | |||| | ||| |||||||| | || |||||||| || Sbjct 735 TTCTTCTCAGG-TTCTTTCTGTTCAATTTACTGGTTGAAGAAAAGAGGACTGATGCCAGG 793 Query 58064 CCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTG 58123 || | || |||||||| || || | ||||| || | || |||||| || || Sbjct 794 GCTTTCTTTCTCTAACGAGTTAATCTCAAGAGACGAAGGATTGCACTGTGATTTCGCATG 853 Query 58124 CCTAATGTACTC---TCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATTAT 58180 || | ||| | ||||| || |||||| | ||| | | | ||||| Sbjct 854 TTTATTATACACCAACCACATCGTTGATAAACTTCCAAAGGAAACAGTTCAGAAAATTAT 913 Query 58181 CACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCT 58240 | || || || | || || || || ||| | ||||| || || || | | Sbjct 914 CCTTGACGCAGTTGAAATTGAGAAAGAATTTATTCTTGAAGCACTTCCCGTTAAGTTAAT 973 Query 58241 CGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCT 58300 ||| ||||||| |||||||||||| | ||||||||||||||||| || ||| | ||| | Sbjct 974 CGGAATGAACAGTGATTTGATGTCGCAATACATTGAGTTTGTTGCTGATAGATTATTGTT 1033 Query 58301 CGAACT--GATTGGAGAGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTG 58358 ||| | || || | || ||| |||| ||| ||| || |||||||| ||| | || Sbjct 1034 GGAATTAGGAAACGAAAAAGT-ATT-CAACGCGACAAACCCATTTGATTTCATGGAAATG 1091 Query 58359 ATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAA 58415 || || | | || || || ||||| || ||||| | |||| | ||||| |||||| Sbjct 1092 ATTTCAATTCAAGGGAAAACGAACTTCTTTGAAAAGAGAGTTGGTGAATACCAAAAA 1148 Score = 170 bits (188), Expect = 2e-37 Identities = 753/1174 (64%), Gaps = 41/1174 (3%) Strand=Plus/Minus Query 23028 AGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATA 23087 || |||| || || || || ||||| ||| | |||||||||| ||| || ||||||| Sbjct 2592 AGCCAAG-TTACAAACTGCAACCTCATCTGGCGCAGTGTACTCTATAATCTCAGTACATA 2534 Query 23088 GATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTT-GCTTTTTCGATTGCACGAATCC 23146 || | |||| || || || || || ||||| | |||| | ||||| | ||| Sbjct 2533 AGTTTGAAGACTTAATTGTACCTAAGTTTTGTTGGTTTGATTTTGAGTTTGCA-GCATCT 2475 Query 23147 TTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATA 23206 ||||| | |||||| || || || ||||| | || || || | ||| ||| | Sbjct 2474 TTGTACAACATGTAAGGAGTACCTGTCTCAATTTGAGATTCTAAGATTTTGAACCAAAG- 2416 Query 23207 GTCT-GAGCGTGAACACGTCGCACGTACCTGCCTT-CTTCCTCGTACTTTTGGTACAACG 23264 |||| | || | | || | | | | || | ||| |||||||| |||||||| Sbjct 2415 GTCTTGTGCTTTGATT-GTTTTTCTTCCTTTCCCTGCTTTTTCGTACTTCGTGTACAACG 2357 Query 23265 CGTCAAATTCGGCACCGTA-ACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGA 23323 | || ||||| |||| || ||| || | || || || ||| ||||||||| | | Sbjct 2356 CTTCGAATTCAGCACTGTGCACA-TCTGAAAGACCTGGGCATTCGTGCGGACACATTAAA 2298 Query 23324 CTCCACATTGAGTCATTTTCA---ACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCG 23380 ||||| | ||||||| || ||| ||| || | ||| || | ||| | |||| Sbjct 2297 GTCCACTCTC---CATTTTCTTTCACACGTTGCATGAATAAATCTGGAACCCACAAAGCG 2241 Query 23381 TAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAG 23440 || || | || | || | ||| ||||| ||| || || ||||| || || ||| Sbjct 2240 TAAAATAAATCTCTTGCTCTTTGCTCTTCTTTACCGTGATTTTTCTTCAAGTCTAAGAAG 2181 Query 23441 TCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCC----CGGTCTCTT 23496 || || || || |||||||| ||||| | ||| | || || | || || | || | Sbjct 2180 TCAAATACATCAGCATGCCAAGGCTCCAAGTACATTGCGAAAGAACCTTTACGTTTTCCT 2121 Query 23497 ATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAG 23556 || || ||||| ||||| | || || | ||| | ||||||| ||| || |||| Sbjct 2120 ----CCACCTTGATCTACGTATCTAGCAGTATCGTTAAATACTCTTAACATTGGAACGAT 2065 Query 23557 ACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAAC 23616 |||||| || || ||| | || | |||||| | || || | |||||| | Sbjct 2064 ACCGTTAGAAGCACCGTTTGTTCCTTTGATGTATGAACCTGTCGCACGGATGTTGTGCAT 2005 Query 23617 GTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTA 23676 || || || || || | |||| || ||| || |||||||| | ||||| || Sbjct 2004 AGCCAATCCAATTCCACCAGCTGATTGAGAGATCTGAGCACATTGTTTTAATGTGTCATA 1945 Query 23677 GATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTT 23736 || || || || || || || || | | | | |||||| || |||||||| | ||| Sbjct 1944 AATTCCTTCAATACTATCTTCCTTCATTGTTAAAAGGAAACAAGATGACATTTGTGGTTT 1885 Query 23737 GGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAG 23796 ||||| | | |||| || || | ||||| || || |||| | ||||||| Sbjct 1884 TGGCGTTCCAGAGTTAAACAACGTTGGTGTTGCGTGTGTGAACCATCCTTCTGACATTAA 1825 Query 23797 ATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCAT 23856 ||||| || | || || | || || || | | ||| || || | | || ||||| Sbjct 1824 GTTGTATGTCTTAATTGCAGAGTCGATATCTTTTTTGTGAATTCCAACAGAAACACGCAT 1765 Query 23857 CATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTG 23916 || ||| | ||| || | || | | | ||||| | ||| | || || || || Sbjct 1764 CAACATTTGTTGTGGGCGTTCTGCAATCATTCCGTTCAATTTCATTAGGTACGAGCGCGT 1705 Query 23917 CATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATT 23976 || ||||||||| ||||||||||| || |||| || | ||||| | ||| |||| Sbjct 1704 CAACGTTTTAAAACCAAAATAGTCGTATCTAAAATCTCTATCGTAAATGATGCTTGAATC 1645 Query 23977 CAAACGGTACGCATTGGCAGCGATGATGTTGTAA--------TGAAAATTCGATATCATC 24028 | ||||| ||| | ||||| | |||| || || | || || Sbjct 1644 AAGACGGTCTTTATTTTCCATCATGATCTCGTAAACGTCGTCTGCAACT----AATGAT- 1590 Query 24029 GGCGTTTTAACGCCGGTCTTTGGATCGATCGCTTCATACATATCGATAATGACATC-GAA 24087 || |||| | || || |||||||| || || | |||||| | || || || || Sbjct 1589 -GCATTTT--CTCCAGTTTTTGGATCAATGTAATCGTGCATATCTGTCATTACTTCAGAG 1533 Query 24088 AAAAGAATCTTTAGTCTCCTTGTGCAAATTAGACACGGCCAATCTAGCCGCAAGCAACGA 24147 |||| ||||| || || |||||||| || || || || | | | || | ||||| Sbjct 1532 AAAACCTTCTTT-GTTTCTTTGTGCAAGTTTGATACAGCAATACGTGAAGCCAACAACGC 1474 Query 24148 ATAGTCGGAATGATCGATGGTCATGGCCGCTGCC 24181 ||| || | |||||| || || | ||||||||| Sbjct 1473 ATAATCAGGATGATCAATTGTTTTTGCCGCTGCC 1440 >seq108602 Length=371 Score = 125 bits (138), Expect = 6e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||||| || || ||||| |||||| | || ||||||| || Sbjct 347 ATGCAGATCTTTGTTAAGACTCTTACTGGAAAAACCATCACCTTAGATGTTGAACAATCT 288 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || ||| | | | || || || | || || ||||| Sbjct 287 GACACCATCGACAATGTCAAGACTAAGATTCAAG-ATAAAGAGGGAATTCCACCAGACCA 229 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | || || || ||||| ||||| || |||||| || ||| | |||||||| Sbjct 228 ACAGAGACTTATCTTTGCTGGAAAACAATTAGAAGACGGTAGAACTCTATCAGATTATAA 169 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||||||||||||| ||||| ||| |||| || ||||| || || || Sbjct 168 CATTCAAAAAGAATCTACTCTCCATTTGGTCCTCAGACTTAGAGGAGG 121 >seq97248 Length=461 Score = 114 bits (126), Expect = 1e-20 Identities = 169/234 (72%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||| |||||||| |||||||||||| | || || || || || ||| | || ||||| | Sbjct 178 CAAATATGCAAATCTTCGTAAAGACTTTAACTGGTAAGACAATTACCTTAGATGTTGAGC 237 Query 31248 CGTCCGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306 || || | | | || | ||||| || || || ||||| |||||| | || || Sbjct 238 AATCAGATACTATTGACAACGTCAAGACTAAG-ATTCAAGACAAAGAAGGCATCCCACCA 296 Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GA 31365 || || ||| | | || |||||||| || || || ||||| | | || || | | || Sbjct 297 GATCAACAGAGATTGATCTTCGCTGGAAAGCAATTAGAAGA-TGGAAGAACATTATCTGA 355 Query 31366 TTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| |||||||| ||||| || ||||||||| |||| |||||||| || || || Sbjct 356 TTACAACATTCAGAAAGAGTCCACTCTTCATTTGGTCCTTAGACTCAGAGGAGG 409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445158196323840