Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq34388 86.0 1e-11 seq3443 84.2 4e-11 >seq34388 Length=241 Score = 86.0 bits (94), Expect = 1e-11 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 35585 CTTCCTCCATGCCACATGACTGCTCAATTT-TATGTGGCTAATGGAGAATTGTCGTGCCA 35643 || || || ||||| || ||| || | || ||||| ||| | || |||||||||| Sbjct 3 CTACCGCCGTGCCAT-TGCCTGTTCCAGTTCTATGTTGCTGACGGCAGGCTGTCGTGCCA 61 Query 35644 GTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCATACTC 35703 |||||||||||| | |||| || |||| || ||||||||||| || || ||| | Sbjct 62 GTTGTATCAGCGCTCGGCAGATATCTTCCTGGGTGTTCCCTTCAATATCGCTTCCTACGC 121 Query 35704 TCTTCTGACTCATCTGATGGCCAGTATGGTGGGTCTAAAACCGGGAGAGTTTATCCTCAC 35763 | ||||| || || ||||| | | || || || | || ||||| |||| ||| Sbjct 122 ATTGCTGACACACATGGTGGCCCATGTCACAGGCCTCAAGGCCGGCGAGTTCATCCACAC 181 Query 35764 TCTTGGTGACGCACACATTTATAATACCCACATTGA 35799 || ||||| || ||||| ||| | |||| |||| Sbjct 182 GCTGGGTGATGCCCACATCTATTCAAACCACCTTGA 217 >seq3443 Length=346 Score = 84.2 bits (92), Expect = 4e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 94792 CCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAATG 94851 || ||||||| | || || |||||| | || || |||||||||||||| ||||| Sbjct 186 CCGCCAGCAGATTGTGAAATTTTTGCCGTTTGTTTTAGCGTATCATAAATACCATCAATA 127 Query 94852 CTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGTGTGACTGTTCCACAA 94911 ||||| || | | ||| |||||| || ||||| | ||| ||| | || || || Sbjct 126 CTATCGTCCTTCATTGCCAAAAGGAAACAAGAGGACATTTGAGGTTTAGGGGTACCCGAA 67 Query 94912 TTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTTC 94970 ||||||| || || | ||| ||||||||||| | | ||||| | ||||| || || Sbjct 66 TTAAACAAGGTAGGTGTAGCGTGGGTAAAATACTTTTTGGACATCAACTCATAGGTCTC 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 988200056880160