Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq59922 360 2e-94 seq75063 178 2e-39 seq64137 170 2e-37 seq3443 105 8e-18 seq14334 102 1e-16 seq17866 86.0 8e-12 >seq59922 Length=6033 Score = 360 bits (398), Expect = 2e-94 Identities = 1007/1519 (66%), Gaps = 51/1519 (3%) Strand=Plus/Minus Query 62683 CGTAATAAATGGTTTCAAAGATCTTCT-TATTTA--GATCTTG-TGCTTCCGGGCTATCA 62738 ||||||| || |||||||| | ||||| | || | | ||||| | |||| | ||| Sbjct 2863 CGTAATACATTGTTTCAAAAA-CTTCTCTGTTCAATGCTCTTGCTTCTTCTGAT---TCA 2808 Query 62739 AATGGATAAT----TTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGAT 62794 ||||| ||| |||||| | || || || ||||| ||||||||||| | || || Sbjct 2807 AATGGC-AATCCCATTAAGA---TGAAAGCATCTGCTAACCCTTGAACACCTAATCCAAT 2752 Query 62795 AGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTAT 62854 || | || | | | |||||| ||| ||||||| || || || | ||| ||| || Sbjct 2751 TGGACGGTGACGCATGTTAGAGTTTTTAGCTTCTTCAACTGGGTAGAAGTTACCATCAAT 2692 Query 62855 AATTTTATTGAGATTTC--TGACAATT---ACTTTGACCACATCCTTCAGTTTGAGAAAA 62909 |||||||| | | ||| || | || || || || || || |||| | Sbjct 2691 GATTTTATTCA-AGTTCAATGTCGCTTGGTACGTT----ACCTCGAACAATTTGTCGTGA 2637 Query 62910 TCAAATCGCCCATCTATTACAAACATGTT----CAATGCAACAGATGCCAGATTACACAC 62965 || ||| ||| || || | ||||| || |||||| | ||| |||| ||||| || Sbjct 2636 TCGAATTTCCCTTC-ATCAGTAACATATTTAGGCAATGCTAAAGAAGCCAAGTTACAAAC 2578 Query 62966 GGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGAT 63025 || ||||||| | | | || | ||| |||||||| || | || | |||| || Sbjct 2577 TGCAACCTCATCTGGCGCAGTGTACTCTATAATCTCAGTACATAAGTTTGAAGACTTAAT 2518 Query 63026 AGTTCCTAAATTTTGTTGATTACTCTTTTTG---TTACACGCATCCTTATAAAGAATGAA 63082 || ||||| |||||||| || | ||||| || || ||||| || || | ||| | Sbjct 2517 TGTACCTAAGTTTTGTTGGTT--TGATTTTGAGTTTGCA-GCATCTTTGTACAACATGTA 2461 Query 63083 TGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT---CCAGACGACTCGAGCCTT 63139 |||||||| || ||||| |||||||||| || ||| ||| | | || | || || Sbjct 2460 AGGAGTACCTGTCTCAATTTGAGATTCTAAGAT---TTTGAACCAAAGGTCTTGTGCTTT 2404 Query 63140 TATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTC 63199 ||| | | | | ||| | || ||||||| || ||||| |||||| || | Sbjct 2403 GATTGTTTTTCTTCCTTTCCCTGCTTTTTCGTACTTCGTGTACAACGCTTCGAATTCAGC 2344 Query 63200 TCCCCAAACAT-TGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGT 63258 | |||| || | || || ||||| | ||||||||| || | ||||||||| | Sbjct 2343 ACTGTGCACATCTGAAAGACCTGGG-CATTCGTGCGGACACATTAAAGTCCACTCTCCAT 2285 Query 63259 CATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTG 63318 || ||||| |||| ||| || | ||| |||| ||| | ||| ||||| |||||||| Sbjct 2284 TTTCTTTCACACGTTGCATGAATAAATCTGGAACCCACAAAGCGTAAAATAAATCTCTTG 2225 Query 63319 TTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAAT 63378 ||| || || || || || ||| || || | || | ||| | | | ||||| || Sbjct 2224 CTCTTTGCTCTTCTTTACCGTGATTTTTCTTCAAGTCTAAGAAGTCAAATACATCAGCAT 2165 Query 63379 GCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGT 63438 |||| || |||||||| || || | | || ||||| ||| || ||||||| || Sbjct 2164 GCCAAGGCTCCAAGTACATTGCGAAAGAACCTTTACGTTTTCCTCCACCTTGATCTACGT 2105 Query 63439 ATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGG 63498 ||||||| || | ||| | ||||| |||||||||| |||||||| || ||| || | Sbjct 2104 ATCTAGCAGTATCGTTAAATACTCTTAACATTGGAACGATACCGTTAGAAGCACCGTTTG 2045 Query 63499 TACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTG 63558 | || ||| || || | ||||| || || || | | || ||||| || | Sbjct 2044 TTCCTTTGATGTATGAACCTGTCGCACGGATGTTGTGCATAGCCAATCCAATTCCACCAG 1985 Query 63559 CCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCAT 63618 | || |||||| || ||| ||||||| |||||||| || ||||| || ||||| | Sbjct 1984 CTGATTGAGAGATCTGAGCACATTGTTTTAATGTGTCATAAATTCCTTCAATACTATCTT 1925 Query 63619 CGATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAAT 63677 | |||| ||||| |||| || | |||||||| | | ||||| | ||||| Sbjct 1924 CCTTCATTGTTAAAAGGAAACAAGAT-GACATTTGTGGTTTTGGCGTTCCAGAGTTAAAC 1866 Query 63678 AAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCT 63737 || || || | ||||| || |||||| ||| || | || ||||| |||| ||| || Sbjct 1865 AACGTTGGTGTTGCGTGTGTGAACCATCCTTCTGACATTAAGTTGTATGTCTTAATTGCA 1806 Query 63738 GAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTT 63797 ||||| ||||| || |||||||| || | |||||||| ||||| || || || | | Sbjct 1805 GAGTCGATATCTTTTTTGTGAATTCCAACAGAAACACGCATCAACATTTGTTGTGGGCGT 1746 Query 63798 TCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAA 63857 || |||| | ||| | ||||| | ||| || ||| ||||||||||||||| Sbjct 1745 TCTGCAATCATTCCGTTCAATTTCATTAGGTACGAGCGCGTCAACGTTTTAAAACCAAAA 1686 Query 63858 TAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTG 63917 |||| |||| ||| |||| |||||||| || |||| || || |||| || Sbjct 1685 TAGTCGTATCTAAAATCTCTATCGTAAATGATGCTTGAATCAAGACGGTCTTTATTTTCC 1626 Query 63918 TTAACTATATC--CATGGTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGAT 63975 | | || || | || | || || |||| | | || || ||| |||| |||| Sbjct 1625 ATCATGATCTCGTAAACGTCGT-CTGCAACTAAT-GATGCATTTTCTCCAGTTTTTGGAT 1568 Query 63976 TAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTA 64035 || || | | | ||| ||| |||||| || | || |||||||| ||||| | Sbjct 1567 CAATGTAATCGTGCATATCTGTCATTACTTCAGAGAAAACCTTCTTTGTTTCTTTGTGCA 1508 Query 64036 GATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAG 64095 ||||||| || || | | || | | |||||||| ||||| | | || | Sbjct 1507 AGTTTGATACAGCAATACGTGAAGCCAACAACGCATAATCAGGATGATCAATTGTTTTTG 1448 Query 64096 TGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTC 64155 ||||| | ||| ||||| || |||| |||| | ||||| ||||||| | | | | Sbjct 1447 CCGCTGCCACTTCAGCTGCAAGGTTGTCTAATTGTGTTGTTGTAACTCCATCAAACAACC 1388 Query 64156 CTTGAATAACCTTCATAGC 64174 ||| ||| |||||||| || Sbjct 1387 CTTCAATTACCTTCATGGC 1369 Score = 334 bits (370), Expect = 1e-86 Identities = 624/905 (69%), Gaps = 25/905 (3%) Strand=Plus/Minus Query 33278 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33337 || |||||| ||||||||||||||| || | ||||| || || || ||||| |||| Sbjct 1160 CAAAACTCCAGCTTTTTGGTATTCACCAACTCTCTTTTCAAAGAAGTTCGTTTTCCCTTG 1101 Query 33338 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCC 33397 | ||| || |||||||||||||||| || || || | ||| | | ||||| ||| Sbjct 1100 AATTGAAATCATTTCCATGAAATCAAATGGGTTTGTCGCGTTGAATACTTTTTCGTTTCC 1041 Query 33398 CAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATT 33457 ||||| | | |||||||| || || || || || ||| ||||| |||| || Sbjct 1040 TAATTCCAACAATAATCTATCAGCAACAAACTCAATGTATTGCGACATCAAATCACTGTT 981 Query 33458 CATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGC 33517 |||||| || | ||||| ||||| || || || |||||||| ||||| || || Sbjct 980 CATTCCGATTAACTTAACGGGAAGTGCTTCAAGAATAAATTCTTTCTCAATTTCAACTGC 921 Query 33518 ATTTGTTATAATAAATCT-AACGGTTTCTTCACTCGGTG-------GATGTAATAAATGT 33569 | ||||| ||| ||| ||||| | || ||||| | ||| Sbjct 920 GTCAAGGATAATTT-TCTGAACTGTTTCCTTTGGAAGTTTATCAACGATGTGGTTGGTGT 862 Query 33570 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTA 33629 ||| |||||||||||||| ||||||| || |||||||| ||||| |||||| Sbjct 861 ATAAT----AAACATGCGAAATCACAGTGCAATCCTTCGTCTCTTGAGATTAACTCGTTA 806 Query 33630 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33689 || || | || || ||||| || || | || || | ||| | || ||| ||| || Sbjct 805 GAGAAAGAAAGCCCTGGCATCAGTCCTCTTTTCTTCAACCAGTAAATTGAACAGAAAGAA 746 Query 33690 CCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG 33749 || || ||||| |||||||| ||||| ||||| |||| |||||| ||| || | | Sbjct 745 CCTGAGAAGAAAATTCCTTCCACTGCTGCAAATGCAACAAGTCTTTCTGCAAAT---GAT 689 Query 33750 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33809 | |||| ||||| ||||||||| || || || ||||| ||| || || Sbjct 688 CCTTCATCAATCCAACGCAAAGCCCAATCTGCTTTTACCTTAACACATTCCATTGTGTCA 629 Query 33810 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33869 || |||||||| | ||| | ||| || || | ||||||| |||||||| || ||||| Sbjct 628 ATAGCATTAAACAAATATTCTTTGTCCTTCGTGTCTTTAATGTAAGTATCTATTAAAAGC 569 Query 33870 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33929 |||| |||| || ||||||||||||| || | || || ||||||||| || | ||| Sbjct 568 GAATACGTTTCAGAGTGAATGTTTTCAACTGCTACTTGGAACCCGTAGAAAAATTTTGCC 509 Query 33930 TCGGTAATCTGCACTTCTGTACAAAATCGT-TCTGCTAAATTTTCATTCACTATTCCATC 33988 || ||| ||| ||||||| |||| | | |||||||| |||||||| || |||||||| Sbjct 508 TCAGTATACTGAACTTCTG-ACAAGAAATTCTCTGCTAAGTTTTCATTTACAATTCCATC 450 Query 33989 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT-ATTTTTCGTCTGGTGTTAGTT 34047 || || ||||| |||||||||||||| | ||||| | || | | || | || | Sbjct 449 TGATGCCGCGAAAAAAGCCAATACATGTTTAACAAAATGACGTTCATTATCGT-TCAGCT 391 Query 34048 ---TATTCCAATCATTGATATC-TTTAGATATATCCACTTCTTCCACTGTCCAAAATGAT 34103 ||| ||||||| | | || | || | ||| | ||||| ||||||| || Sbjct 390 TCGTATCCCAATCAATTAAGTCGGCTTGA-AGATCAATCTCTTCGGCTGTCCAGAAACTA 332 Query 34104 GCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAAT 34163 || || |||||||| || | | ||| ||||||| | ||| ||||| || | ||||||| Sbjct 331 GCTTCGGCCTTTTTGTAGAAAGCCCAAATGTCATCGTGTTGAATTGGAAATAGAACAAAT 272 Query 34164 CTATT 34168 || || Sbjct 271 CTGTT 267 >seq75063 Length=1318 Score = 178 bits (196), Expect = 2e-39 Identities = 598/922 (65%), Gaps = 22/922 (2%) Strand=Plus/Plus Query 33258 AAATGATTGTCT---TCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTT 33314 |||| |||||| |||| |||||||| || |||||| || |||| || | || Sbjct 78 AAATTCTTGTCTGTGTCTTTTGACATAACCCCTGCTTTTTGATACTCACTTACTTTTCTT 137 Query 33315 TCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTA 33374 ||||| |||||||||||||||| | ||| || | ||||| | || || ||||| Sbjct 138 TCGAAGAAATTAGTTTTTCCTTGAAGTGAAATCATGTCCATCCATTCGAATGGATTAACT 197 Query 33375 ACATTGTAAAtttttttAAATCCCAA---TTCAGAAATCAATCTATCTGCGACGAATTCT 33431 ||||| || | ||| | |||| | ||| | | |||||| || || || || Sbjct 198 GCATTG-AAGTGCTTTGGTACTCCAAGAGTAAAGAGA--AGTCTATCAGCAACAAACTCA 254 Query 33432 ATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTA 33491 |||||| | ||| | || | |||||| || || |||| || || | || ||| Sbjct 255 ATATATTGTCCCATAAGTTTGCTATTCATACCAATAAGTTCTACGGGCAAAGATTCAGAT 314 Query 33492 AGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATAAATC-TAACGGTTTCTTCACT 33550 | |||||| | ||||| | ||| || | || | ||| || ||| || |||| | Sbjct 315 ACAAATTCAAGCTCAATTGCTACTGCTTCAGTCAAAATT--TCATAAA--TTCTTTCATT 370 Query 33551 CGGTGGATGTAATAA----ATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCT 33606 | | | || ||| ||||||| ||| |||||| || || || || | |||| Sbjct 371 TGATACCT-TATTAACCATATGTTTATACAACAAACAAGCAAAGTCAGTATGTAATCCCT 429 Query 33607 CGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAA 33666 | ||||| || || || ||||| || || || ||||| || | |||||| | Sbjct 430 CATCTCTTGAGATCAACTCATTAGAGAAACAAAGGCCTGGCATAAGAGATCTCTTTTTCA 489 Query 33667 GCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAA 33726 ||| || || | || || || || ||||| ||||||||||| |||||| |||| Sbjct 490 ACCAGAAAATTGCGCAAAAAGACCCAGAGAAGAAAATTCCTTCTACACAAGCAAACGCAA 549 Query 33727 TAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCT 33786 | | ||| || || | | | | | || ||||| || |||||| || ||||||| Sbjct 550 TCAATCTTTCAGCAAATGAGTCATTCTTATTAATCCATTTAAAAGCCCAGTCAGCCTTCT 609 Query 33787 TTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTT 33846 | || ||| || | || || || ||||| || | | |||||| || ||| Sbjct 610 TCTTAACAGTTTCAATATTATCAATAGCCTTAAAAAGGAAATCTTTTTCTTTGAGATCAC 669 Query 33847 TAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCT 33906 ||| ||||||||| || | ||| || |||| |||| || || || | | Sbjct 670 TAATATAAGTATCAATAAGGAGAGAGTAAGTTTCACTGTGAACATTCTCCATCATACTTT 729 Query 33907 GAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTA 33966 | || || ||||| |||||| | || | || || ||||| | | || | ||| | Sbjct 730 GGAAGCCATAGAAGCATCTAACTTCAGGGATTTGTACTTCAGCAGCGAAGCATTCAATAA 789 Query 33967 AATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT 34026 ||| ||| || ||||||||| || || || || || | || | ||| || || | Sbjct 790 GATTCTCAAGGACAATTCCATCAGAAGCAGCGAAGAAAGCAAGCACGTATTTGATGAAGT 849 Query 34027 ATTTTTCGTCTGGTGTTAGTTT---ATTCCAATCATTGATATCTTTAGATATATCCACTT 34083 | | || || ||| ||| ||||||||| || | |||| || | ||| | | Sbjct 850 GTCTCTCATCATCATTTAATTTATCATTCCAATCTTTTAAATCTGAAGCCAAATCTATCT 909 Query 34084 CTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATT 34143 |||| || |||||| |||| | | |||||| ||||| | ||| | ||| || |||| Sbjct 910 CTTCAGCTACCCAAAAGCATGCTTGTTGCTTTTTGTACATTTCCCAAACGTCGTGGTATT 969 Query 34144 GGATTGGGAAAATAACAAATCT 34165 |||||||||||| ||| ||||| Sbjct 970 GGATTGGGAAAAGAACGAATCT 991 >seq64137 Length=2701 Score = 170 bits (188), Expect = 2e-37 Identities = 1146/1816 (63%), Gaps = 55/1816 (3%) Strand=Plus/Minus Query 62073 TTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATA 62132 || ||||| ||||| || ||| ||||||| || ||||| | || ||||||||| Sbjct 2391 TTTGTACGGAGATAATAAGATCCTGTTTTTAATCCATTCCTCCAAGCATAGAAATGCATA 2332 Query 62133 CTCGTTAG--TTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGAT 62190 || | | ||| ||| | | || ||| | ||| | ||||| ||||||| |||| Sbjct 2331 CTACTCAACTTTTTGAA--AGTAGGTTCTCCCATAAATACATTCAAAGATTGAGATTGAC 2274 Query 62191 CGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAA 62250 ||| | | | || || ||| | || | || ||| |||| || ||||||| Sbjct 2273 AGATATATGGAGCTCTCTCAATAGCGAGATTGAGGAGGACCTTCTGTGGGATCTCCCAAA 2214 Query 62251 TAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTA--TTCT-GAATGGATCCAC 62307 |||||||| | | ||| | ||| ||||||| |||| |||| | || ||| Sbjct 2213 CTGTTTTATAGAGTTTCTTTAGATCATCTGGAATACCTGTAACTTCTTGTCAAGAACCAT 2154 Query 62308 CATCTACCA--TAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAAC 62365 | ||||| ||| | ||||||||||| | ||||||| | | | || ||| | | Sbjct 2153 TTT-TACCAATTAAGGCG-TTCTTGATCTCCCAAGTCCATAAATCTTTTTCAATTAGATC 2096 Query 62366 TCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAAT 62425 | | | || || || || || || ||||||||||| || ||||| | |||||| || Sbjct 2095 TTTTACAAGGTGGGGATTTACAACCATGAATTCTCCAGCCAGGACTCTTCTAGTGTAGAT 2036 Query 62426 ATT--ACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCA 62483 ||| | | | || || || | || || |||||||| ||||| | || ||| Sbjct 2035 ATTTGAATTGAAT--GGCTCAAAACTTTCGTTGTTTCCCAAGATTTGGGAGGTACTAGCA 1978 Query 62484 GTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTT 62543 || ||||| ||||| || | || | ||||||| ||| | || | | || ||| || Sbjct 1977 GTAGGCATTGGTGCTACAAGTAGAGAGTTTCTAATACCATGGGTCTTTACTTCTTCTCTT 1918 Query 62544 AGATGT-TCCCAATTCCAAAGATCCG---ACGGTACAACANNNNNNNNNNNATATTGTAG 62599 | |||| ||||| | | || | | || || |||| | Sbjct 1917 A-ATGTATCCCAGTCGTATCTGTCAGTGTATGGCTTGACGTTCCAAAGATCGAATTGGAA 1859 Query 62600 AATACCGTTACTGGCGTACGA--TCCTACATATGTATCATATGGTCCTTCCTTCTCAGCT 62657 |||| | | | | | || |||| | || ||||| | |||||||| || |||| Sbjct 1858 TTTACCTTCA--GACATTGGAGATCCTGGGAAAGTTTCATAAGTTCCTTCCTCCTTAGCT 1801 Query 62658 AGTT-TACA-ACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTA 62715 | || || | | | | || ||| | | || ||||| ||||||||||||||||| | Sbjct 1800 AATTCTAAAGATTTGGAGATA--GCAGCATGGTAGATGGTCTCAAAGATCTTCTTATTCA 1743 Query 62716 GATCTTGTGCT-TCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAAT 62774 ||| | ||| | || ||||||||| || | || || || || | Sbjct 1742 CATCATTAGCTCTTTCATCT-TCAAATGGAATCTTCATCTTCTGGAAAGCATCAGCAAGC 1684 Query 62775 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 62834 ||||| ||||| || || | |||||||| ||| ||| || ||||||||| |||| Sbjct 1683 CCTTGCACACCGATTCCAACAGGTCTATTTCTAAAATTTGAATATTCAGCTTCAGGAACT 1624 Query 62835 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCC 62894 ||||| | ||| |||| |||| | | || | || | ||| | | || || Sbjct 1623 GGATAGAAGTTATTATCAATAACTCTGTTCAAGTTCTTTGTAATGATCATAGTAACTTCA 1564 Query 62895 TTCAGTTTGAGAAAATCAAATCGCCCATCTATTACAAACATGTT----CAATGCAACAGA 62950 | || | | ||||| |||||| || | || | || ||||| || || Sbjct 1563 TGTAGCCTTTCGTAGTCAAAGGTACCATCTTCTA-ATACGTATTTTGGCAATGAAATTGA 1505 Query 62951 TGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAG 63010 || || ||||| || ||||| | || ||| | || | || |||||| ||| || Sbjct 1504 GGCGAGGTTACATACAGCTACTTGATCTTTATCAGTGTACTCCATGATCTCACAGCAGAG 1445 Query 63011 ATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTA-CACGCATCCT 63069 || || |||||||||||| | ||| || || ||| ||| ||| || | ||||| Sbjct 1444 GTTTGAACTCTTGATAGTTCCAAGATTCTGCTGGTTAGATTTTCCATTAGCATG-ATCCT 1386 Query 63070 TATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGA 63129 |||| || ||| |||| ||||| || ||||| || || | || || ||||| | Sbjct 1385 TATACAGCATGTATGGGACTCCAGTCTCTATCTGTGACTCAAGGATGGCATTCCATAGAT 1326 Query 63130 CTCGAGCCTTTATTATAGAT-TTGTATCTCCTT---TCTC---TTTCGTATAGAGTATAC 63182 | | ||||| | | | || | ||||| |||| |||| ||||||| Sbjct 1325 GTTGTGCCTTGACAGTCTTTCTTCCTTTTCCTTCAGTCTCATATTTCTCATAGAGT---- 1270 Query 63183 AATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATC 63242 || ||| || || | ||||||| | | |||| || ||||||| ||||| | Sbjct 1269 --TC-TTCAAATTCTTTTCCCCAAGTTTCGAACAATTGGGGGCATTCATTTGGACAGAAG 1213 Query 63243 AACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 63302 | | ||| ||| | ||| | | |||| |||| || | |||| || ||| | ||| Sbjct 1212 AGTGTCCAGTCTTCATCAGCTTCTACTCTCCTCATGAATATATCACTAACCCACAAAGCG 1153 Query 63303 ATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 63362 || || ||||||| ||| ||||| || || || ||||| | | | ||||| Sbjct 1152 TAGAAGAGGTCTCTTGCTCTCTGTTCATCTTTACCATGGTTCTTCCTCAAGTTAAGGAA- 1094 Query 63363 GCCATAA-TATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTT 63421 | ||||| |||| | |||||| ||||| | ||| || || | | |||| | || Sbjct 1093 GTCATAAATATCTGGATGCCATGGTTCGAGGTAGATAGCGAAAGCTCCCTTTCTCTTACC 1034 Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 ||||| || || | ||||| || |||| ||| | || || | |||||| | || || Sbjct 1033 GCCTCCTTGGTCAACATATCTTGCAGTGTCATTGAAGACCCTAAGCATTGGGACAAGTCC 974 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 ||||| ||| || || || ||| ||| | | | | |||| || | Sbjct 973 ATTTGAGTGACCGTTTGTTCCTCTGATGTAGGAAGAAGTTGATCTAATACAGTGAACAGC 914 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 | || ||||| || || | |||||||| | || ||| ||| ||| || || | || Sbjct 913 CAATCCAATTCCTCCAGCATTCTTAGAGATAATAGCACATTGTTGTAATGTTTCGAAAAT 854 Query 63602 GCCTTCTATGCTATCATCGATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGAG 63660 ||||| || |||||| ||| | ||| || ||| || | |||||| | | Sbjct 853 TCCTTCAATTGAATCATCCCGCATTGCTAA-TAAAAAGCATGAACTCATTTGTGGTTTTG 795 Query 63661 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGAT 63720 || || |||||||| | ||| || | ||||| || |||||||| | | | |||| Sbjct 794 GGGTACCAGCATTAAAGAGGGTTGGTGTGGCGTGTGTGAACCATTTCTGACTCATGAGAT 735 Query 63721 TGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTA 63780 || ||||||| || || |||| || | |||||| || | | ||| | ||| | Sbjct 734 CATATGTCTCAAATGCAGATTCTAAGTCATTCTTATGAATACCAATAGAGACTCTCATAA 675 Query 63781 ACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63840 ||| ||| ||||| ||||||||||| | ||||| ||| | || || ||| |||| | Sbjct 674 GCATTGTCTGTGGTCTCTCAACAATTTTATCGTTTACTTTTAGTAAATATGATCTTTCAA 615 Query 63841 AAGTTTTAAAACCAAA 63856 ||| || || ||||| Sbjct 614 GAGTCTTGAACCCAAA 599 >seq3443 Length=346 Score = 105 bits (116), Expect = 8e-18 Identities = 195/286 (68%), Gaps = 0/286 (0%) Strand=Plus/Minus Query 63423 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63482 || |||||||||| ||| | || || | ||| |||| || ||| || | |||||| Sbjct 315 CCGCCCTGATCTACGTAACGCGCAGTATCGTTAAAAACCTGCAGCATGGGCACAATACCA 256 Query 63483 TTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGAT 63542 || || | ||||||||||| | |||||| || |||| || | ||| || || Sbjct 255 TTGGAAGTCCCATTGGTACCTGCGATATAAGAACCTGTGGCCCGTACATTGTGTATGGAA 196 Query 63543 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATG 63602 |||||||| || || || || || ||| ||| | |||||| ||| ||||| || Sbjct 195 AGACCTATCCCGCCAGCAGATTGTGAAATTTTTGCCGTTTGTTTTAGCGTATCATAAATA 136 Query 63603 CCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTA 63662 || || || ||||| || |||| | || ||||| |||||||| | || Sbjct 135 CCATCAATACTATCGTCCTTCATTGCCAAAAGGAAACAAGAGGACATTTGAGGTTTAGGG 76 Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTT 63708 || |||| |||||| |||||||| | |||||| ||||| | |||| Sbjct 75 GTACCCGAATTAAACAAGGTAGGTGTAGCGTGGGTAAAATACTTTT 30 >seq14334 Length=297 Score = 102 bits (112), Expect = 1e-16 Identities = 184/263 (70%), Gaps = 7/263 (3%) Strand=Plus/Plus Query 33907 GAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGT-ACAAAATCGTTCTGCT 33965 |||| |||||||| | | ||||||| | || ||||| | || |||| ||| ||| Sbjct 1 GAAAACCGTAGAAGAACTTTGCCTCGGCATATTGAACTTCACTTACGAAATT-TTCAGCT 59 Query 33966 AAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 34025 | |||||||||||| || |||||| || ||||| ||||| | | ||||||||| ||| Sbjct 60 AGATTTTCATTCACAATACCATCAGATGCAGCAAAGAACGCTAGAATATGTTTTATGAAA 119 Query 34026 TATTTTTCGTCTGGTGTT--AGT--TTATTCCAATCATTGATATCTTTAGATATATCCAC 34081 || ||| || | | || | | || |||||||||| | ||| | | || | Sbjct 120 TAACGTTCATC-GCTATTCAACTTGTTGGTCCAATCATTAAGATCCGTGTGCAGGTCTAT 178 Query 34082 TTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATA 34141 |||||| | |||||||| ||||| ||||| ||| || ||| | ||||| | Sbjct 179 TTCTTCAGCAGTCCAAAAACTAGCCTCACATTTTTTGTACCAATCCCACAAATCATGGTG 238 Query 34142 TTGGATTGGGAAAATAACAAATC 34164 || ||| |||||||||||||||| Sbjct 239 TTTGATAGGGAAAATAACAAATC 261 >seq17866 Length=285 Score = 86.0 bits (94), Expect = 8e-12 Identities = 146/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 62909 ATCAAA-TCGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGG 62967 |||||| ||||| ||| | | |||||| | ||||| || |||| |||||| || | Sbjct 27 ATCAAACTCGCCATTCT-TAATAAACATTGGAAGTGCAATGGAAGCCAAATTACATACTG 85 Query 62968 CTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAG 63027 | ||||||| | | ||||| | ||| || || ||||| || | |||| Sbjct 86 CCACCTCATCCGGGGAAGTATATTCCAATATTTCCGTACAAAGGTTGGACGAGCGAATAG 145 Query 63028 TTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAG 63087 | |||||||| ||||| || |||||| | || |||||||||||||| || |||| | Sbjct 146 TACCTAAATTCTGTTGGTTGCTCTTTCTATTGGCGGCATCCTTATAAAGCATATATGGCG 205 Query 63088 TACCAGTTTCAATCTGAGATTCTATAATC 63116 ||||||| || || || || || | |||| Sbjct 206 TACCAGTCTCTATTTGTGACTCCAAAATC 234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628958276866560