Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq59922 318 5e-82 seq64137 185 8e-42 seq14334 113 4e-20 seq81092 96.9 3e-15 seq3443 93.3 4e-14 >seq59922 Length=6033 Score = 318 bits (352), Expect = 5e-82 Identities = 1209/1873 (65%), Gaps = 52/1873 (3%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 |||||||| || || || | || | ||| | ||| |||| || ||||||||||| ||| Sbjct 3509 TCAACTGTAAACTTAATTGCATCCGTTGCTGCTTTCGTTCGCAAGTAATACATTCCCGTT 3450 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 || | || | ||||||||| || |||||| |||||||| || | | | ||| Sbjct 3449 TTCAATCCTTTTTCCCATCCGTAGAAGTGCATAGACGTCAGTTTCCCGAAGTTTGCATTT 3390 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 || || | || ||| ||||||| |||| || | || ||||| || || || Sbjct 3389 TCCATGAAAATATTCAATGATTGAGATTGACAAATGTAAGCCCCTCTATCCGCAGCTTGA 3330 Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCT 37029 || | ||| |||||| || |||||||| | ||||| || | | ||| | | | Sbjct 3329 TCGATAATCGCTTTTTGCGAAATCTCCCATGCTGTTTTGTAAAGATCTTTAAGTCGTTGT 3270 Query 37030 GGTAA---ATCTAAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCA 37086 || | ||||| | ||| ||||| || ||| | || ||| || || || Sbjct 3269 GGAACGTTATCTATGTTTTGGATAGATCCGTTAGCTGTCATAATCATACGACGCATTTCT 3210 Query 37087 TTATTCCACA-TATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGA-- 37143 || ||||||| | |||| | | ||| ||| |||||| ||| || || | ||| Sbjct 3209 TTGTTCCACAATCCTTCTT-TAACTAGATCTTTCAATAAGTGCTTGTTAACGA--TGATG 3153 Query 37144 AAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCA 37203 || || || || || || | ||||||||| || || |||||||||||| | | || Sbjct 3152 AACTCACCTGACAACACACGTCTTGTATAGATGTTTGAAGTATATGGTTCGAAACATTCG 3093 Query 37204 TTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTT 37263 || || | | ||||||| ||| || || || ||||||||||| | || | || Sbjct 3092 TTGTTTCCAAGGATTTGAGCTGTTGAAGCTGTTGGCATTGGTGCCAATAACAATGAGTTA 3033 Query 37264 CTCAATCCATG-TGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGG 37322 | || || || | || | |||| ||| | | | | ||| |||||| |||||| Sbjct 3032 CGCACACCGTGCTCCATCACTTCTGCTTTCAA-TACGTCCCATTCCCATCTGCTTGTTGG 2974 Query 37323 GTT--CTTTAACCACATATCATATTGTAGAAT--ACCTTTACTCGCTGGAGAATCGTTAT 37378 | | || ||||||||| |||| |||| |||||| |||| || | | || Sbjct 2973 AGTAACATT--CCACATATCGAATTG--GAATTGACCTTTTGAAACTGGCGATCCTTCAT 2918 Query 37379 ATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCT---AGTGCGGCAT 37435 | | | || ||||| | || |||||||| || ||||| | | || || | Sbjct 2917 AAGATTGGTATGGTCCATCAACTTTAGCTAAATCTT---TAGATGCAGTCATTGAAGCGT 2861 Query 37436 AATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCAT 37495 |||| |||||||| |||| || | | || ||| | |||||||||| || |||| Sbjct 2860 AATACATTGTTTCAAAAACTTCTCTGTTCAATGCTCTTGCTTCTTCTGATTCAAATGGCA 2801 Query 37496 AGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTT 37555 | |||| ||| || || |||| || || || |||||||| | || || || | || Sbjct 2800 ATCCCATTAAGATGAAAGCATCTGCTAACCCTTGAACACCTAATCCAATTGGACGGTGAC 2741 Query 37556 TCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTA 37615 | | ||||| | | |||| ||||| || | || ||| || |||||||| | Sbjct 2740 GCATGTTAGAGTTTTTAGCTTCTTCAACTGGGTAGAAGTTACCATCAATGATTTTATTCA 2681 Query 37616 GATTTTTAACTAGTATTTTCGTAATTATTCTC----AACTTGTCG--AACATAAATACGT 37669 || | | || || ||| | ||| || |||||| | | | | | | Sbjct 2680 AGTTC---AAT-GTCGCTTGGTACGTTACCTCGAACAATTTGTCGTGATCGAATTTCCCT 2625 Query 37670 T-ATTATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCT 37728 | || | ||||| ||||| ||| | | ||| | | ||||| || ||||| |||||| Sbjct 2624 TCATCAGTAACATATTTAGGCAATGCTAAAGAAGCCAAGTTACAAACTGCAACCTCATCT 2565 Query 37729 TCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTG 37788 | | | | ||||||||| ||||| | || || ||||||| || || || Sbjct 2564 GGCGCAGTGTACTCTATAATCTCAGTACATAAGTTTGAAGACTTAATTGTACCTAAGTTT 2505 Query 37789 CTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCT 37848 ||| || |||||| || || |||||| || | || || || || ||| || Sbjct 2504 TGTTGGTTTGATTTTGAGTTTGCAGCATCTTTGTACAACATGTAAGGAGTACCTGTCTCA 2445 Query 37849 ATTTGAGCCTCGATAATAGATTTCCAT--AAACTTCTTG--CTTTAACGATCGCTTTAAt 37904 ||||||| || | |||||| | ||| ||||| |||| ||| | ||| | Sbjct 2444 ATTTGAGATTCTA----AGATTTTGAACCAAAGGTCTTGTGCTTT---GATTGTTTTTCT 2392 Query 37905 ttttttCTTTG---TTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATC 37961 | |||| || ||||||| | | || || | || ||| | ||||| Sbjct 2391 TCCTTTCCCTGCTTTTTCGTACTTCGTGTACAACGCTTCGAATTCAGCACTGTGCACATC 2332 Query 37962 GCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCG 38021 | | ||||| |||||| |||||||||| || ||| ||| ||| || || || || Sbjct 2331 TGAAAGACCTGGGCATTCGTGCGGACACATTAAAGTCCACTCTCCATTTTCTTTCACACG 2272 Query 38022 TTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTC 38081 || ||| |||||||| || ||||| || || |||||||||| | | ||| | ||||| Sbjct 2271 TTGCATGAATAAATCTGGAACCCACAAAGCGTAAAATAAATCTCTTGCTCTTTGCTCTTC 2212 Query 38082 GTTCCCTACATTCTTTCTT-AAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTA 38140 || || ||| |||||| ||| || || || |||| |||||| ||||| || || | Sbjct 2211 TTTACCGTGATT-TTTCTTCAAGTCTAAGAAGTCAAATACATCAGCATGCCAAGGCTCCA 2153 Query 38141 TATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGT 38200 || || | | | ||| | ||| | || || |||| | |||||| | || | Sbjct 2152 AGTACATTGCGAAAGAACCTTTACGTTTTCCTCCACCTTGATCTACGTATCTAGCAGTAT 2093 Query 38201 TATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATAT 38260 ||| ||| ||||||||| || || ||||| ||||| |||||| | || || | Sbjct 2092 CGTTAAATACTCTTAACATTGGAACGATACCGTTAGAAGCACCGTTTGTTCCTTTGATGT 2033 Query 38261 AAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATA 38320 | | ||| | || || || || || | |||||| |||||||| || || || | Sbjct 2032 ATGAACCTGTCGCACGGATGTTGTGCATAGCCAATCCAATTCCACCAGCTGATTGAGAGA 1973 Query 38321 TTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTA 38380 | ||| ||||||||||| || ||| | || ||||| ||||| || ||||| |||| || Sbjct 1972 TCTGAGCACATTGTTTTAATGTGTCATAAATTCCTTCAATACTATCTTCCTTCATTGTTA 1913 Query 38381 GTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATG 38440 | |||||| |||||||| || ||| ||||| | |||||| || || || | || Sbjct 1912 AAAGGAAACAAGATGACATTTGTGGTTTTGGCGTTCCAGAGTTAAACAACGTTGGTGTTG 1853 Query 38441 CATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCAC 38500 | ||| |||||||| ||| |||| | || ||||| | ||| || || ||||| Sbjct 1852 CGTGTGTGAACCATCCTTCTGACATTAAGTTGTATGTCTTAATTGCAGAGTCGATATCTT 1793 Query 38501 CGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTAT 38560 |||||| || | ||| || | ||| | ||| |||||||| | |||| || | Sbjct 1792 TTTTGTGAATTCCAACAGAAACACGCATCAACATTTGTTGTGGGCGTTCTGCAATCATTC 1733 Query 38561 TATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAAT 38620 ||| ||| | ||| ||||| || ||||| | |||||||| ||| | Sbjct 1732 CGTTCAATTTCATTAGGTACGAGCGCGTCAACGTTTTAAAACCAAAATAGTCGTATCTAA 1673 Query 38621 AATCTCTATCGTA 38633 ||||||||||||| Sbjct 1672 AATCTCTATCGTA 1660 Score = 223 bits (246), Expect = 3e-53 Identities = 559/836 (67%), Gaps = 39/836 (5%) Strand=Plus/Minus Query 11339 TTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATAC 11398 ||||| ||||||| ||||| ||| || || || || || |||| | ||| || Sbjct 1147 TTTTGGTATTCACCAACTCTCTTTTCAAAGAAGTTCGTTTTCCCTTGAATTGAAATCATT 1088 Query 11399 TCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAAT 11458 ||||| || ||| || || | ||||| |||||||| ||||| || ||| Sbjct 1087 TCCATGAAATCAAATGGGTTTGTCGCGTTGAATACTTTTTCGTTTCCTAATTCCAACAAT 1028 Query 11459 AATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGA 11518 |||||||| || || || || || || || ||||| ||| || ||||| || || | Sbjct 1027 AATCTATCAGCAACAAACTCAATGTATTGCGACATCAAATCACTGTTCATTCCGATTAAC 968 Query 11519 TCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATC 11578 | || |||| || | | ||| || || || || | ||| || |||| ||| || Sbjct 967 TTAACGGGAAGTGCTTCAAGAATAAATTCTTTCTCAATTTCAACTGCGTCAAGGATAATT 908 Query 11579 GACGTTAT-AACT---TCCTTAGATGGTG-------GATGTAATAAATGTTTAAACATTA 11627 || | |||| ||||| | || ||||| | ||| ||| || Sbjct 907 ----TTCTGAACTGTTTCCTTTGGAAGTTTATCAACGATGTGGTTGGTGTATAA----TA 856 Query 11628 AACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTA 11687 |||| || |||||||| || || ||||||||||| |||| || ||||| || | | Sbjct 855 AACATGCGAAATCACAGTGCAATCCTTCGTCTCTTGAGATTAACTCGTTAGAGAAAGAAA 796 Query 11688 ATCCGGGCATCAATCCTCGtttttttATCCA--AAATATAGCAGCAAATGAACCAGAAAA 11745 || ||||||| ||||| ||| || | ||| |||| | ||| || ||||| || || Sbjct 795 GCCCTGGCATCAGTCCTCTTTTCTTCAACCAGTAAATTGAACAGAAA--GAACCTGAGAA 738 Query 11746 GAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGA 11805 ||| ||||| ||||| ||||||||||| || | ||||||| || || | | || | Sbjct 737 GAAAATTCCTTCCACTGCTGCAAATGCAACAAGTCTTTCTGCAAAT-----GATCCTTCA 683 Query 11806 T--ATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCG 11863 | ||||| |||||||| ||||| || || ||||||||||| || ||||| Sbjct 682 TCAATCCAACGCAAAGCCCAATCTGCTTTTACCTTAACACATTCCATTGTGTCAATAGCA 623 Query 11864 TTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATAC 11923 ||||| |||| ||| || | | ||| | | || ||||||||||| | |||| Sbjct 622 TTAAACAAATATTCTTTGTCCTTCGTGTCTTTAATGTAAGTATCTATTAAAAGCGAATAC 563 Query 11924 ATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAA 11983 |||| || ||||| ||||| | |||| ||| || || |||||| || |||||| | | Sbjct 562 GTTTCAGAGTGAATGTTTTCAACTGCTACTTGGAACCCGTAGAAAAATTTTGCCTCAGTA 503 Query 11984 CACTGTACATCC-ACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGA 12042 |||| || || ||| |||| | || ||||| || ||||||||||| ||||| | Sbjct 502 TACTGAACTTCTGACAAGAAAT-TCTCTGCTAAGTTTTCATTTACAATTCCATCTGATGC 444 Query 12043 TGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAA--TT--TAT 12098 || ||||| || | || |||||| | ||| | ||| | | | ||| | || ||| Sbjct 443 CGCGAAAAAAGCCAATACATGTTTAACAAAATGACGTTCAT-TATCGTTCAGCTTCGTAT 385 Query 12099 CCCAATCATCTAAATC-TTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGC 12153 |||||||| ||| || |||| | ||| | ||||| | ||||| ||||| || Sbjct 384 CCCAATCAATTAAGTCGGCTTGA-AGATCAATCTCTTCGGCTGTCCAGAAACTAGC 330 >seq64137 Length=2701 Score = 185 bits (204), Expect = 8e-42 Identities = 1179/1863 (63%), Gaps = 53/1863 (3%) Strand=Plus/Minus Query 36796 GTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTTTTTAGC 36855 |||||||| || | | || || | ||||| | | |||||| ||| ||||||| Sbjct 2418 GTGAATTTAATTGAGTCTGCAGCTGCCTTTGTACGGAGATAATAAGATCCTGTTTTTAAT 2359 Query 36856 CCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATA 36915 || ||||| | || ||||||||||| ||| ||| | | ||||| | | ||| Sbjct 2358 CCATTCCTCCAAGCATAGAAATGCATACTACTCAACTTTTTGAAAGTAGGTTCTCCCATA 2299 Query 36916 TATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAA 36975 ||| ||| |||||| |||| ||| | | | |||| || || | | | Sbjct 2298 AATACATTCAAAGATTGAGATTGACAGATATATGGAGCTCTCTCAATAGCGAGATTGAGG 2239 Query 36976 ATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTAAA 37035 | || || | ||||||||||| |||||||| | || |||| || |||||| | | Sbjct 2238 AGGACCTTCTGTGGGATCTCCCAAACTGTTTTATAGAGTTTCTTTAGATCATCTGGAATA 2179 Query 37036 TCTAAA---TGTTGAATAGAACCATTATGTAACACAATT---GTATTCTTTATGTCATTA 37089 || | | ||| ||||||||| | || ||||| | ||||| || || | Sbjct 2178 CCTGTAACTTCTTGTCAAGAACCATTTTT--AC-CAATTAAGGCGTTCTTGATCTCCCAA 2122 Query 37090 TTCCACATATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCT 37149 |||| | || | | ||||| ||| | | ||||| |||||||||||| || ||| Sbjct 2121 GTCCATAAATCTTTTTCAATTAGATCTTTTACAAGGTGGGGATTTACAACCATGAATTCT 2062 Query 37150 CCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTA 37209 |||| | |||||||| || || ||||| | | |||| |||| || || || Sbjct 2061 CCAGCCAGGACTCTTCTAGTGTAGATATTTGAATTGAATGGCTCAAAACTTTCGTTGTTT 2002 Query 37210 CTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAAT 37269 | || ||||| || ||| ||||||||||||||||||| || || ||||| | Sbjct 2001 CCCAAGATTTGGGAGGTACTAGCAGTAGGCATTGGTGCTACAAGTAGAGAGTTTCTAATA 1942 Query 37270 CCATGTGTATTAATTCTCTTTT-TTAGTTCATTCCAATCCCATAAATCTGT---TGGGTT 37325 ||||| || || | | |||| | ||| | || ||| || || || || ||| || Sbjct 1941 CCATGGGTCTTTACT-TCTTCTCTTAATGTATCCCAGTCGTATCTGTCAGTGTATGGCTT 1883 Query 37326 --CTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTC 37383 | || ||| | ||| |||| | |||||| | | |||||| | | || Sbjct 1882 GACGTT--CCAAAGATCGAATTGGAATTTACCTTCAGACATTGGAGATCCTGGGAAAGTT 1825 Query 37384 TCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCT---AGTGCGGCATAATAT 37440 ||||||| ||| | ||||||| ||| || |||| | || |||| || Sbjct 1824 TCATAAGTTCCTTCCTCCTTAGCTAATTCTAAA---GATTTGGAGATAGCAGCATGGTAG 1768 Query 37441 ATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCC 37500 || || || || || | |||| | || ||| ||| || |||| | | | Sbjct 1767 ATGGTCTCAAAGATCTTCTTATTCACATCATTAGCTCTTTCATCTTCAAATGGA-ATCTT 1709 Query 37501 AATAATATAAACA-CATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTT 37559 || | | | | ||||||| | || || |||||||| || | ||||||| | | Sbjct 1708 CATCTTCTGGAAAGCATCAGCAAGCCCTTGCACACCGATTCCAACAGGTCTATTTCTAAA 1649 Query 37560 ATTAGATCTAGAC-GATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGAT 37618 ||| || || | | ||| |||||||| | || |||| || | | | || | | Sbjct 1648 ATTTGAA-TATTCAGCTTCAGGAACTGGATAGAAGTTATTATCAATAACTCTGTTCAAGT 1590 Query 37619 TTTTAACTAGTATTTTCGTAA-TTATTCTCAACTTGTCGAACATAAA--TACGTTATTAT 37675 | || | || | |||| || | | ||| ||| | ||| ||| | || | Sbjct 1589 TCTTTGTAATGATCATAGTAACTTCATGTAGCCTT-TCGTAGTCAAAGGTACCATCTTCT 1531 Query 37676 TA-ACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTA 37734 | || |||| ||| ||||| || | || ||||||||||| |||| ||||| | | Sbjct 1530 AATACGTATTTTGGCAATGAAATTGAGGCGAGGTTACATACAGCTACTTGATCTTTATCA 1471 Query 37735 CTAAATTGTATAATCTCTGTACAGAGATT---ACTCGATCTAATTGTTCCCAAATTGCTT 37791 | | | || ||||| ||||| || |||| | || ||||| | ||| Sbjct 1470 GTGTACTCCATGATCTCACAGCAGAGGTTTGAACTCT---TGATAGTTCCAAGATTCTGC 1414 Query 37792 TGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATT 37851 || || |||||| |||| | ||| ||||| || || || || ||| ||||| Sbjct 1413 TGGTTAGATTTTCCATTAGCATGATCCTTATACAGCATGTATGGGACTCCAGTCTCTATC 1354 Query 37852 TGAGCCTCGATAATAGATTTCCATAAACTTCTTGCTTTAACGATCGCTTTAAtttttttC 37911 || | ||| | || | ||||||| | | ||| || || || ||| | ||||| Sbjct 1353 TGTGACTCAAGGATGGCATTCCATAGATGTTGTGCCTTGACAGTC--TTTCTTCCTTTTC 1296 Query 37912 TTT--GTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCATAATC 37969 || || || |||| ||| | || | ||| || || ||||| ||| | ||| Sbjct 1295 CTTCAGTCTCATATTTCTCATAGAGTTCTTCAAATTCTTTTCCCCAAGTTTCGAACAATT 1236 Query 37970 CTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAA 38029 || ||||| |||||| | || | ||| |||||||| |||||| | ||| | Sbjct 1235 GGGGGCATTCATTTGGACAGAAGAGTGTCCAGTCTTCATCAGCTTCTACTCTCCTCATGA 1176 Query 38030 ATAAATCAGGTACCCATAATGCAGTA-AATAAATCTTTGGTTCTATATTCTTCGTTCCCT 38088 ||| |||| ||||| || || ||| || | ||| | | ||| | ||| || || || Sbjct 1175 ATATATCACTAACCCACAAAGC-GTAGAAGAGGTCTCTTGCTCTCTGTTCATCTTTACCA 1117 Query 38089 ACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATC 38148 ||||| || ||| | || || || | ||||| | ||||||||||| | || || Sbjct 1116 TGGTTCTTCCTCAAGTTAAGGAAGTCATAAATATCTGGATGCCATGGTTCGAGGTAGATA 1057 Query 38149 GACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATAT 38208 | | ||||| ||| ||| | ||||| || | || |||||| | |||| ||| | Sbjct 1056 GCGAAAGCTCCCTTTCTCTTACCGCCTCCTTGGTCAACATATCTTGCAGTGTCATTGAAG 997 Query 38209 ATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCC 38268 | || | ||| || || | ||||| || | |||||| | || || || | | Sbjct 996 ACCCTAAGCATTGGGACAAGTCCATTTGAGTGACCGTTTGTTCCTCTGATGTAGGAAGAA 937 Query 38269 TTAGCTCGTATATTACTTATC-GACAATCCTATTCCACCTGCATGTTTTGATATTAAAGC 38327 | | || ||| | | | | | |||||| ||||| || |||| || || || | ||| Sbjct 936 GTTGATCTAATA-CAGTGAACAGCCAATCCAATTCCTCCAGCATTCTTAGAGATAATAGC 878 Query 38328 GCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAA 38387 ||||||| ||| || || || || ||||| || |||||| |||| || || ||| Sbjct 877 ACATTGTTGTAATGTTTCGAAAATTCCTTCAATTGAATCATCCCGCATTGCTAATAAAAA 818 Query 38388 ACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTAT 38447 || | |||||| || ||| || || || ||||| | || || | || ||| | Sbjct 817 GCATGAACTCATTTGTGGTTTTGGGGTACCAGCATTAAAGAGGGTTGGTGTGGCGTGTGT 758 Query 38448 GAACCATTTTTCCGACAAAT--AATTATATGTTTCTATTACATCATCTATATCACCGCCG 38505 |||||| |||| ||| || || |||||| || | | || |||| ||| Sbjct 757 GAACCA--TTTCTGACTCATGAGATCATATGTCTCAAATGCAGATTCTAAGTCATTCTTA 700 Query 38506 TGAATACCTAGAGATACCCTCATTAGCATATGT-TGTGGTCTTTCTATTATTTTATTATT 38564 |||||||| | ||| || ||||| ||||| ||| |||||||| || | ||||||| || Sbjct 699 TGAATACCAATAGAGACTCTCATAAGCAT-TGTCTGTGGTCTCTCAACAATTTTATCGTT 641 Query 38565 CTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATC 38624 ||| |||| ||| ||| |||| | || || | ||||| || ||| | || ||| Sbjct 640 TACTTTTAGTAAATATGATCTTTCAAGAGTCTTGAACCCAAAGAAATCATAGGTATGATC 581 Query 38625 TCT 38627 ||| Sbjct 580 TCT 578 >seq14334 Length=297 Score = 113 bits (124), Expect = 4e-20 Identities = 184/261 (70%), Gaps = 7/261 (3%) Strand=Plus/Plus Query 11955 GAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATA--AAATCTTTCCGC 12012 |||| || ||||| | |||||| | | | || || || || || |||| |||| || Sbjct 1 GAAAACCGTAGAAGAACTTTGCCTCGGCATATTGAACTTC-ACTTACGAAAT-TTTCAGC 58 Query 12013 TAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAA 12072 || ||| ||||| |||||||||||| | ||||| || ||||| ||||||||||| || Sbjct 59 TAGATTTTCATTCACAATACCATCAGATGCAGCAAAGAACGCTAGAATATGTTTTATGAA 118 Query 12073 GTATTTTTCGTCTTTAGTTAATTTATC---CCAATCATCTAAATCTTTTGATAAATCTAC 12129 || ||| || || | || || | |||||||| | ||| | | |||| Sbjct 119 ATAACGTTCATCGCTATTCAACTTGTTGGTCCAATCATTAAGATCCGTGTGCAGGTCTAT 178 Query 12130 TTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATA 12189 ||||||| | ||||||||||| ||| | ||| ||| ||| | ||| | |||||| | Sbjct 179 TTCTTCAGCAGTCCAAAAACTAGCCTCACATTTTTTGTACCAATCCCACAAATCATGGTG 238 Query 12190 CTTAATAGGGAAAATAACGAA 12210 || |||||||||||||| || Sbjct 239 TTTGATAGGGAAAATAACAAA 259 >seq81092 Length=944 Score = 96.9 bits (106), Expect = 3e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 55868 GATATTGTTGGAATAGACGAAGGACAATTCTTTAATGATATTGTAGAGTTTTGTGAATAT 55927 ||||| ||||||| || |||||||| |||||| | || |||| ||||| || ||| | Sbjct 619 GATATAATTGGAATTGATGAAGGACAGTTCTTTGAAGACCTTGTGGAGTTCTGAGAAGAA 560 Query 55928 ATAGCAAATAAAGGAAAAATTGTTATCGTTGCTGCATTAGATGGAACATATGAACGTAAA 55987 || || |||| |||||| ||||||| || ||||||||||| || || | ||| | || Sbjct 559 ATGGCTAATAGAGGAAAGCTTGTTATTGTAGCTGCATTAGACGGTACTTTTGAGAGAAAG 500 Query 55988 CCATTTGG 55995 ||||| || Sbjct 499 CCATTCGG 492 >seq3443 Length=346 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 38217 CATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCG 38276 ||| || || |||||||| || | || || |||| | ||||||| ||| | || || Sbjct 271 CATGGGCACAATACCATTGGAAGTCCCATTGGTACCTGCGATATAAGAACCTGTGGCCCG 212 Query 38277 TATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTT 38336 || ||| ||| || | ||||| || || ||| || ||| ||| || |||||| Sbjct 211 TACATTGTGTATGGAAAGACCTATCCCGCCAGCAGATTGTGAAATTTTTGCCGTTTGTTT 152 Query 38337 TAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGA 38396 || ||||||| | ||||| || ||||| || ||||| |||| | | |||||| || Sbjct 151 TAGCGTATCATAAATACCATCAATACTATCGTCCTTCATTGCCAAAAGGAAACAAGAGGA 92 Query 38397 CATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGG 38435 ||||||||| || || || | ||||| || ||||| Sbjct 91 CATTTGAGGTTTAGGGGTACCCGAATTAAACAAGGTAGG 53 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467885544762880