Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq59922 311 8e-80 seq75063 197 1e-45 >seq59922 Length=6033 Score = 311 bits (344), Expect = 8e-80 Identities = 608/892 (68%), Gaps = 26/892 (3%) Strand=Plus/Minus Query 13580 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13639 |||||| ||||||| |||||| |||||||||||||| ||||| |||| | ||| || | Sbjct 1148 TTTTTGGTATTCACCAACTCTCTTTTCAAAGAAGTTCGTTTTCCCTTGAATTGAAATCAT 1089 Query 13640 TTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAG 13699 |||||| ||||||||||| ||| | | | || ||||| || |||| ||| || | Sbjct 1088 TTCCATGAAATCAAATGGGTTTGTCGCGTTGAATACTTTTTCGTTTCCTAATTCCAACAA 1029 Query 13700 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13759 |||||||||||||| ||||||||| ||||| ||||| ||||||| ||||| || |||| Sbjct 1028 TAATCTATCAGCAACAAACTCAATGTATTGCGACATCAAATCACTGTTCATTCCGATTAA 969 Query 13760 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAAT 13819 || || |||| | | | ||||||||| || || || || || ||||| Sbjct 968 CTTAACGGGAAGTGCTTCAAGAATAAATTCTTTCTCAATTTCAACTGCGTCAAGGATAAT 909 Query 13820 AAT-TGTAATAATCTCATTAGAAGG------AGGATATTTTAGATGTTTAAAAATTAAAC 13872 | || | | | | || |||| | ||| | | | ||| ||| ||||| Sbjct 908 TTTCTGAACTGTTTCCTTTGGAAGTTTATCAACGATGTGGTTGGTGTATAA----TAAAC 853 Query 13873 ACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATC 13932 | || |||||||| || | || || ||||| || | ||||| || || | | | Sbjct 852 ATGCGAAATCACAGTGCAATCCTTCGTCTCTTGAGATTAACTCGTTAGAGAAAGAAAGCC 793 Query 13933 CTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATA 13992 ||||||||| ||||| ||| || ||||| | |||| | || || || || ||||| | Sbjct 792 CTGGCATCAGTCCTCTTTTCTTCAACCAGTAAATTGAACAGAAAGAACCTGAGAAGAAAA 733 Query 13993 TTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATA 14052 |||| || ||||| ||||| || | | || |||| |||| ||| ||| | || | Sbjct 732 TTCCTTCCACTGCTGCAAATGCAACAAGTCTTTCTGCAAATGATCCTTCATCAATCCAAC 673 Query 14053 TCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAA 14112 | | |||||| || | |||| |||| | | |||||||| ||||||||||||| Sbjct 672 GCAA------AGCCCAATCTGCTTTTACCTTAACACATTCCATTGTGTCAATAGCATTAA 619 Query 14113 ATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGC-TATACATT 14171 | |||||||| || || || || | |||||| ||||| || | |||| |||| || Sbjct 618 ACAAATATTCTTTGTCCTTCGTGTCTTTAATGTAAGTATCTATTA-AAAGCGAATACGTT 560 Query 14172 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCAT 14231 |||||||| |||||||| | |||| || || || || || || | || || | | Sbjct 559 TCAGAGTGAATGTTTTCAACTGCTACTTGGAACCCGTAGAAAAATTTTGCCTCAGTATAC 500 Query 14232 TGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCA 14291 || ||||| || | || | || || || |||||||| || || ||||| || || Sbjct 499 TGAACTTCTGACAAGAAATTCTCTGCTAAGTTTTCATTTACAATTCCATCTGATGCCGCG 440 Query 14292 AAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTT---TTTTCCAA 14348 ||||| ||||||| | ||||| ||| | | || | || ||| || | | | |||| Sbjct 439 AAAAAAGCCAATACATGTTTAACAAAATGACGTTCATTATCGTTCAGCTTCGTATCCCAA 380 Query 14349 TCGGATAAATC--CTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTT 14406 || ||| || ||| |||||| | || || ||||||| |||||||| | || | Sbjct 379 TCAATTAAGTCGGCTT--GAAGATCAATCTCTTCGGCTGTCCAGAAACTAGCTTCGGCCT 322 Query 14407 TTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCT 14458 |||| || | |||| || || | | | || ||||| | |||||||| Sbjct 321 TTTTGTAGAAAGCCCAAATGTCATCGTGTTGAATTGGAAATAGAACAAATCT 270 >seq75063 Length=1318 Score = 197 bits (218), Expect = 1e-45 Identities = 623/953 (65%), Gaps = 28/953 (3%) Strand=Plus/Plus Query 13520 AAACTAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT---TAGAAATAACGCC 13576 ||| || |||||| |||| || ||| || | |||| ||| | || ||||| || Sbjct 53 AAATTAGAAATCATCATCAGCTGCGAAA---TTCTTGTCTGTGTCTTTTGACATAACCCC 109 Query 13577 CATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATAT 13636 ||||||||| ||||| ||| || |||| ||||| |||||||| |||| ||||| || Sbjct 110 TGCTTTTTGATACTCACTTACTTTTCTTTCGAAGAAATTAGTTTTTCCTTGAAGTGAAAT 169 Query 13637 ATTTTCCATAAAATCAAATGGATTTATTGACAT--AAACACTTTATCACAACCTAGTTCT 13694 | ||||| | || |||||||| | || ||| || |||| || || || Sbjct 170 CATGTCCATCCATTCGAATGGATTAACTG-CATTGAAGTGCTTTGGTACT-CCAAGAGTA 227 Query 13695 AATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCT 13754 || || | ||||||||||| ||||||||||||||| ||| | | | ||||||||| Sbjct 228 AAGAGAAGTCTATCAGCAACAAACTCAATATATTGTCCCATAAGTTTGCTATTCATACCA 287 Query 13755 ATTAGTTTTACAGGAATTATATTG-GTTAAAAATTCTTTTTCTATAGACACAGCCTCTTT 13813 || |||| ||| || | | ||| | || |||||| || || | || || || | Sbjct 288 ATAAGTTCTACGGGCAA-AGATTCAGATACAAATTCAAGCTCAATTGCTACTGCTTCAGT 346 Query 13814 TATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTT--AGATGTTTAAAAATTAAA 13871 | ||| ||| | ||||| || | |||| | ||||||| | | ||| Sbjct 347 CAAAATTTCATAAATTCTTTCATTTGAT--ACCTTATTAACCATATGTTTATACAACAAA 404 Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||| ||| ||| | ||||||||||| || | || || || || | Sbjct 405 CAAGCAAAGTCAGTATGTAATCCCTCATCTCTTGAGATCAACTCATTAGAGAAACAAAGG 464 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAAT 13991 |||||||| | || ||||| ||||| || ||||| ||| ||||| || ||||| Sbjct 465 CCTGGCATAAGAGATCTCTTTTTCAACCAGAAAATTGCGCAAAAAGACCCAGAGAAGAAA 524 Query 13992 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT 14051 ||||| || || ||||||||| || |||| ||| |||| || | || || || Sbjct 525 ATTCCTTCTACACAAGCAAACGCAATCAATCTTTCAGCAAATGAGTCATTCTTATTA--- 581 Query 14052 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTA 14111 |||||||| |||||| |||| || || |||| | || || | |||||||| ||| Sbjct 582 ATCCATTTAAAAGCCCAGTCAGCCTTCTTCTTAACAGTTTCAATATTATCAATAGCCTTA 641 Query 14112 AATAAATATTCCTTCTCTTT---AGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 14168 || | | || || ||||| | ||| ||| || ||||||||||| | || Sbjct 642 AAAAGGAAATCTTTTTCTTTGAGATCACT---AATATAAGTATCAATAAGGAGAGAGTAA 698 Query 14169 ATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGAC 14228 ||||| ||| | || ||||| | || || ||||| ||||||||| |||| | Sbjct 699 GTTTCACTGTGAACATTCTCCATCATACTTTGGAAGCCATAGAAGCATCTAACTTCAGGG 758 Query 14229 CATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCT 14288 ||||||||| | || | ||| | ||| ||| || || |||||| ||| Sbjct 759 ATTTGTACTTCAGCAGCGAAGCATTCAATAAGATTCTCAAGGACAATTCCATCAGAAGCA 818 Query 14289 GCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTT---TTTC 14345 || || || || | | || ||| || |||| | ||| |||| || | ||| ||| Sbjct 819 GCGAAGAAAGCAAGCACGTATTTGATGAAGTGTCTCTCATCATCATTTAATTTATCATTC 878 Query 14346 CAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCT 14405 ||||| |||||| || | ||||| || ||| || |||||| | || Sbjct 879 CAATCTTTTAAATCTGAAGCCAAATCTATCTCTTCAGCTACCCAAAAGCATGCTTGTTGC 938 Query 14406 TTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCT 14458 ||||| |||||| |||| | || | ||| || || |||| || ||||| Sbjct 939 TTTTTGTACATTTCCCAAACGTCGTGGTATTGGATTGGGAAAAGAACGAATCT 991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479073459116800