Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq59922 325 4e-84 seq75063 152 5e-32 seq14334 86.0 6e-12 >seq59922 Length=6033 Score = 325 bits (360), Expect = 4e-84 Identities = 611/892 (68%), Gaps = 26/892 (3%) Strand=Plus/Minus Query 13368 TTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATT 13427 |||||| ||||||| |||||| |||||||| ||||| ||||| |||| | ||| || | Sbjct 1148 TTTTTGGTATTCACCAACTCTCTTTTCAAAGAAGTTCGTTTTCCCTTGAATTGAAATCAT 1089 Query 13428 TTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAA 13487 |||||| ||||| ||||| ||||| | | || ||||| || |||| ||| || || Sbjct 1088 TTCCATGAAATCAAATGGGTTTGTCGCGTTGAATACTTTTTCGTTTCCTAATTCCAACAA 1029 Query 13488 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13547 |||||||||||||| ||||||||| ||||| ||||| ||||||| ||||| || |||| Sbjct 1028 TAATCTATCAGCAACAAACTCAATGTATTGCGACATCAAATCACTGTTCATTCCGATTAA 969 Query 13548 TTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 13607 || || |||| | | | | ||||||||| || || || || || ||||| Sbjct 968 CTTAACGGGAAGTGCTTCAAGAATAAATTCTTTCTCAATTTCAACTGCGTCAAGGATAAT 909 Query 13608 AATCTTAA-TAATGTCATTAGAAG------GAGGATATTTTAGATGTTTAAAAATTAAAC 13660 ||| || | | | || |||| | ||| | | | ||| ||| ||||| Sbjct 908 TTTCTGAACTGTTTCCTTTGGAAGTTTATCAACGATGTGGTTGGTGTATAA----TAAAC 853 Query 13661 ACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATC 13720 | || |||||||| || | || || ||||| || | ||||| || || | | | Sbjct 852 ATGCGAAATCACAGTGCAATCCTTCGTCTCTTGAGATTAACTCGTTAGAGAAAGAAAGCC 793 Query 13721 CTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATA 13780 ||||||||| ||||| ||| || ||||| | |||| | ||| || || || ||||| | Sbjct 792 CTGGCATCAGTCCTCTTTTCTTCAACCAGTAAATTGAACAGAAAGAACCTGAGAAGAAAA 733 Query 13781 TTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATA 13840 |||| || ||||| ||||| || | |||| |||| |||| ||| ||| | | Sbjct 732 TTCCTTCCACTGCTGCAAATGCAACAAGTCTTTCTGCAAATGATCCTTCAT------CAA 679 Query 13841 TCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGA 13900 |||| |||||| || | |||| |||| | | |||||||| || || ||||| | Sbjct 678 TCCAACGCAAAGCCCAATCTGCTTTTACCTTAACACATTCCATTGTGTCAATAGCATTAA 619 Query 13901 ATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGC-TATACATT 13959 | |||| ||| || || || || | |||||| ||||| || | |||| |||| || Sbjct 618 ACAAATATTCTTTGTCCTTCGTGTCTTTAATGTAAGTATCTATTA-AAAGCGAATACGTT 560 Query 13960 TCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCAT 14019 |||||||| |||||||| | |||| || || || || ||| || | || || | | Sbjct 559 TCAGAGTGAATGTTTTCAACTGCTACTTGGAACCCGTAGAAAAATTTTGCCTCAGTATAC 500 Query 14020 TGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCA 14079 || || || || | || | ||||| ||||||||||| ||||| ||||| || || Sbjct 499 TGAACTTCTGACAAGAAATTCTCTGCTAAGTTTTCATTTACAATTCCATCTGATGCCGCG 440 Query 14080 AAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTT---TTTTCCAA 14136 ||||| ||||||| | ||||| ||| | | || | || ||| || | | | |||| Sbjct 439 AAAAAAGCCAATACATGTTTAACAAAATGACGTTCATTATCGTTCAGCTTCGTATCCCAA 380 Query 14137 TCGGCTAAATC--CTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTT 14194 || ||| || ||| |||||| | || || ||||||| |||||||| | || | Sbjct 379 TCAATTAAGTCGGCTT--GAAGATCAATCTCTTCGGCTGTCCAGAAACTAGCTTCGGCCT 322 Query 14195 TTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCT 14246 |||| || | |||| || || | | | || ||||| | |||||||| Sbjct 321 TTTTGTAGAAAGCCCAAATGTCATCGTGTTGAATTGGAAATAGAACAAATCT 270 >seq75063 Length=1318 Score = 152 bits (168), Expect = 5e-32 Identities = 613/953 (64%), Gaps = 28/953 (3%) Strand=Plus/Plus Query 13308 AAACTAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT---TAGAAATAACGCC 13364 ||| || |||||| |||| || ||| || | |||| ||| | || ||||| || Sbjct 53 AAATTAGAAATCATCATCAGCTGCGAAA---TTCTTGTCTGTGTCTTTTGACATAACCCC 109 Query 13365 CATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATAT 13424 ||||||||| ||||| ||| || |||| || || |||||||| |||| ||||| || Sbjct 110 TGCTTTTTGATACTCACTTACTTTTCTTTCGAAGAAATTAGTTTTTCCTTGAAGTGAAAT 169 Query 13425 ATTTTCCATAAAATCGAATGGATTTGTTGACAT--AAACACTTTATCACAACCTAGTTCT 13482 | ||||| | ||||||||||| || ||| || |||| || || || Sbjct 170 CATGTCCATCCATTCGAATGGATTAACTG-CATTGAAGTGCTTTGGTACT-CCAAGAGTA 227 Query 13483 AATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCT 13542 || | | ||||||||||| ||||||||||||||| ||| | | | ||||||||| Sbjct 228 AAGAGAAGTCTATCAGCAACAAACTCAATATATTGTCCCATAAGTTTGCTATTCATACCA 287 Query 13543 ATTAGTTTTACAGGAATTATATT-AGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTT 13601 || |||| ||| || | | ||| || || |||||| || || | || || || | Sbjct 288 ATAAGTTCTACGGGCAA-AGATTCAGATACAAATTCAAGCTCAATTGCTACTGCTTCAGT 346 Query 13602 TATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTT--AGATGTTTAAAAATTAAA 13659 | ||| | ||| | ||||| || | |||| | ||||||| | | ||| Sbjct 347 CAAAATTTCATAAATTCTTTCATTTGAT--ACCTTATTAACCATATGTTTATACAACAAA 404 Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || ||||| ||| ||| | ||||||||||| || | || || || || | Sbjct 405 CAAGCAAAGTCAGTATGTAATCCCTCATCTCTTGAGATCAACTCATTAGAGAAACAAAGG 464 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 13779 |||||||| | || ||||| ||||| || ||||| || || || || ||||| Sbjct 465 CCTGGCATAAGAGATCTCTTTTTCAACCAGAAAATTGCGCAAAAAGACCCAGAGAAGAAA 524 Query 13780 ATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGAT 13839 ||||| || || ||||||||| || | || ||| |||| || | || || || Sbjct 525 ATTCCTTCTACACAAGCAAACGCAATCAATCTTTCAGCAAATGAGTCATTCTTATT---A 581 Query 13840 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTG 13899 |||||||| |||||| |||| || || |||| | || || | || || || || Sbjct 582 ATCCATTTAAAAGCCCAGTCAGCCTTCTTCTTAACAGTTTCAATATTATCAATAGCCTTA 641 Query 13900 AATAAATGTTCCTTCTCTTT---AGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 13956 || | || || ||||| | ||| ||| || ||||||||||| | || Sbjct 642 AAAAGGAAATCTTTTTCTTTGAGATCACT---AATATAAGTATCAATAAGGAGAGAGTAA 698 Query 13957 ATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGAC 14016 ||||| ||| | || || || | || || ||||| || |||||| |||| | Sbjct 699 GTTTCACTGTGAACATTCTCCATCATACTTTGGAAGCCATAGAAGCATCTAACTTCAGGG 758 Query 14017 CATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCT 14076 |||||| || | || | ||| | || ||| ||||| |||||| ||| Sbjct 759 ATTTGTACTTCAGCAGCGAAGCATTCAATAAGATTCTCAAGGACAATTCCATCAGAAGCA 818 Query 14077 GCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTT---TTTC 14133 || || || || | | || ||| || |||| | ||| |||| || | ||| ||| Sbjct 819 GCGAAGAAAGCAAGCACGTATTTGATGAAGTGTCTCTCATCATCATTTAATTTATCATTC 878 Query 14134 CAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCT 14193 ||||| |||||| || | ||||| || ||| || |||||| | || Sbjct 879 CAATCTTTTAAATCTGAAGCCAAATCTATCTCTTCAGCTACCCAAAAGCATGCTTGTTGC 938 Query 14194 TTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCT 14246 ||||| |||||| |||| | || | ||| || || |||| || ||||| Sbjct 939 TTTTTGTACATTTCCCAAACGTCGTGGTATTGGATTGGGAAAAGAACGAATCT 991 >seq14334 Length=297 Score = 86.0 bits (94), Expect = 6e-12 Identities = 175/253 (69%), Gaps = 18/253 (7%) Strand=Plus/Plus Query 14034 AAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCA--AT 14091 |||| |||| || | |||||||| |||||||||||| || ||||| || || | || Sbjct 48 AAAT-TTTCAGCTAGATTTTCATTCACAATACCATCAGATGCAGCAAAGAACGCTAGAAT 106 Query 14092 ATGTTTTT---AATAAAGT--ATTGCTCTTCA--TTGTTGAGTTTTTTCCAATCGGCTAA 14144 ||||||| ||||| || || ||| |||| |||||| ||||||| | Sbjct 107 ATGTTTTATGAAATAACGTTCATCGCTATTCAACTTGTTGG------TCCAATCATTAAG 160 Query 14145 ATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACAT 14204 |||| | || |||| ||| ||| | |||||||||||||| || |||||| ||| Sbjct 161 ATCCGTGTGCAGGTCTATTTCTTCAGCAGTCCAAAAACTAGCCTCACATTTTTTGTACCA 220 Query 14205 TACCCATATTTCTTTATATAATATAGGAAAAACTACAAATC-TTGAAGATGTTTCTTTAA 14263 |||| | || | | | ||||| |||| ||||||| | ||| | ||||||| | Sbjct 221 ATCCCACAAATCATGGTGTTTGATAGGGAAAATAACAAATCGGTTAAGGT-TTTCTTTCA 279 Query 14264 GAATTGGCTCCAT 14276 |||| ||||| || Sbjct 280 GAATCGGCTCTAT 292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477935813441280