Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_004333.2 Length=48247 Score E Sequences producing significant alignments: (Bits) Value seq59862 87.8 6e-13 seq82597 84.2 7e-12 >seq59862 Length=6218 Score = 87.8 bits (96), Expect = 6e-13 Identities = 76/92 (83%), Gaps = 2/92 (2%) Strand=Plus/Minus Query 17815 GGAGACGTGGCTGAGTGGTCGAAAGCGCTCCCCTGCTAAGGGAACGCCTGGAGTAATCTG 17874 ||||||||||| ||||||||||| |||| ||||||||||||| ||| | || ||| Sbjct 926 GGAGACGTGGCCGAGTGGTCGAAGGCGCGCCCCTGCTAAGGGCGTAGATGG-GCAA-CTG 869 Query 17875 GGTCGAGGGTTCGAATCCCTCCGTCTCCGCCA 17906 |||||||||||||||||| |||||| |||| Sbjct 868 TCTCGAGGGTTCGAATCCCTTCGTCTCTGCCA 837 >seq82597 Length=872 Score = 84.2 bits (92), Expect = 7e-12 Identities = 83/103 (81%), Gaps = 6/103 (6%) Strand=Plus/Plus Query 17811 GTTAGGAGACGTGGCTGAGTGGTCGAAAGCGCTCCCCTGCTAAGGGA--ACGCCTGGAGT 17868 || |||||||||||| ||| || ||| ||||||||||||||||||| | | | | Sbjct 217 GTGAGGAGACGTGGCCGAGCGGCTGAAGGCGCTCCCCTGCTAAGGGAGTATACGTCAA-- 274 Query 17869 AATCTGGGTCGAGGGTTCGAATCCCTCCGTCTCCGCC-ACTGA 17910 || | | ||||||||||||||||||||||||||||| ||||| Sbjct 275 AAGC-GTATCGAGGGTTCGAATCCCTCCGTCTCCGCCAACTGA 316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 154068839866816