Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_004629.1 Length=280334 Score E Sequences producing significant alignments: (Bits) Value seq9867 122 2e-22 seq104435 105 1e-17 seq86943 102 1e-16 seq63671 100 5e-16 seq60180 95.1 2e-14 seq59553 91.5 3e-13 seq61813 86.0 1e-11 >seq9867 Length=315 Score = 122 bits (134), Expect = 2e-22 Identities = 76/82 (93%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 272871 ATGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCTAAC 272930 ||||||||||||| ||||||||||||| ||||||| ||||||||||||| |||||||||| Sbjct 106 ATGGTGGGCCCAGAAGGACTTGAACCTTCGACCAATCGATTATGAGTCGACTGCTCTAAC 165 Query 272931 CAACTGAGCTATAGGCCCTTTT 272952 || ||||||||| ||||||||| Sbjct 166 CAGCTGAGCTATGGGCCCTTTT 187 >seq104435 Length=401 Score = 105 bits (116), Expect = 1e-17 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 272868 TATATGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCT 272927 |||||||||||||||| |||||| |||||| ||||| ||||||||||||| |||||| Sbjct 1 TATATGGTGGGCCCAGAAGGACTCGAACCTTCGACCTGCCGATTATGAGTCGGATGCTCT 60 Query 272928 AACCAACTGAGCTATAGGCCC 272948 ||||||||||||||| ||||| Sbjct 61 AACCAACTGAGCTATGGGCCC 81 >seq86943 Length=700 Score = 102 bits (112), Expect = 1e-16 Identities = 82/97 (85%), Gaps = 3/97 (3%) Strand=Plus/Plus Query 273348 ATTTAAATTGGTGCCCGAAGTCGGATTCGAACCGACAAGACCGT--AGCCGGAAGATTTT 273405 ||||| || |||||||| || |||| |||||||| || | |||| || || |||||||| Sbjct 195 ATTTATAT-GGTGCCCGGAGCCGGAATCGAACCGGCACGCCCGTGAAGGCGCAAGATTTT 253 Query 273406 AAGTCTTCTGTGTTTACCAATTTCACCATTCGGGCAT 273442 ||||||| ||||| ||||||||||||||| ||||||| Sbjct 254 AAGTCTTGTGTGTCTACCAATTTCACCATCCGGGCAT 290 >seq63671 Length=2824 Score = 100 bits (110), Expect = 5e-16 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 271740 ATGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCACTTGCTCTACC 271799 |||||||| ||||| ||||||||| |||||||| ||||||||||||| |||||||||| Sbjct 2100 ATGGCTCCCTGACCAAGACTCGAACTTGGGACCCAATGATTAACAGTCATTTGCTCTACC 2041 Query 271800 GACTGAGCTATCACGGAA 271817 |||||||||||| |||| Sbjct 2040 AACTGAGCTATCAGGGAA 2023 >seq60180 Length=5244 Score = 95.1 bits (104), Expect = 2e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 272872 TGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCTAACC 272931 |||||||||| | ||||| ||||| |||||||||| ||||||| |||| ||||||||| Sbjct 2912 TGGTGGGCCCGGAGGGACTCGAACCCCCGACCAAGCGGTTATGAGCCGCCGGCTCTAACC 2971 Query 272932 AACTGAGCTATAGGCCC 272948 |||||||||| |||||| Sbjct 2972 AACTGAGCTACAGGCCC 2988 >seq59553 Length=7800 Score = 91.5 bits (100), Expect = 3e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 272872 TGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCTAACC 272931 |||||||||| | ||||| ||||| | |||||| ||||||||||| ||||||||||| Sbjct 3029 TGGTGGGCCCGCCTGGACTCGAACCAGGGACCAATGGATTATGAGTCCACTGCTCTAACC 3088 Query 272932 AACTGAGCTATAGGCCCT 272949 |||||||||| ||||||| Sbjct 3089 AACTGAGCTACAGGCCCT 3106 >seq61813 Length=3532 Score = 86.0 bits (94), Expect = 1e-11 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 272874 GTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCTAACCAA 272933 |||| |||| |||| || ||||||| |||| ||||||||||| |||||||||||| Sbjct 2122 GTGGTCCCACCAGGGCTCGAACCTGGGACCCTCTGATTATGAGTCAGATGCTCTAACCAA 2063 Query 272934 CTGAGCTATAGGCCCTTTTTAT 272955 |||||||||||| || |||||| Sbjct 2062 CTGAGCTATAGGACCATTTTAT 2041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895717013972480