Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq97248 150 1e-31 seq108602 149 5e-31 seq19544 129 4e-25 seq44811 89.7 4e-13 seq87644 86.0 5e-12 >seq97248 Length=461 Score = 150 bits (166), Expect = 1e-31 Identities = 181/245 (74%), Gaps = 1/245 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| | ||| | || |||||||| ||||| ||||| || ||||||||||| | Sbjct 409 CCTCCTCTGAGTCTAAGGACCAAATGAAGAGTGGACTCTTTCTGAATGTTGTAATCAGAT 350 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | |||| | ||||||||||| || |||||| | ||||| | ||||| || ||| Sbjct 349 AATGTTCTTCCATCTTCTAATTGCTTTCCAGCGAAGATCAATCTCTGTTGATCTGGTGGG 290 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||||||||| ||| || |||| || | || || ||||| | || ||| Sbjct 289 ATGCCTTCTTTGTCTTGAATCTTAGTCTTGACGTTGTCAATAGTATCTGATTGCTCAACA 230 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAATAAA 15376 ||||||||||| || ||||| || | ||| ||||| || ||||||||||||| ||||| Sbjct 229 TCTAAGGTAATTGTCTTACCAGTTAAAGTCTTTACGAAGATTTGCATATTTG-TTATAAA 171 Query 15377 ATTTT 15381 || || Sbjct 170 ATATT 166 >seq108602 Length=371 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| | ||| | || ||||| || || || |||||||| ||||| ||||| | Sbjct 121 CCTCCTCTAAGTCTGAGGACCAAATGGAGAGTAGATTCTTTTTGAATGTTATAATCTGAT 180 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| |||| |||||||||||||||| ||||| | || | | |||||||| |||| Sbjct 181 AGAGTTCTACCGTCTTCTAATTGTTTTCCAGCAAAGATAAGTCTCTGTTGGTCTGGTGGA 240 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||| ||||| || ||| || |||| ||| | || ||||| || | ||| ||| Sbjct 241 ATTCCCTCTTTATCTTGAATCTTAGTCTTGACATTGTCGATGGTGTCAGATTGTTCAACA 300 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||||||| |||||||| || || ||||| || ||||| || ||||| Sbjct 301 TCTAAGGTGATGGTTTTTCCAGTAAGAGTCTTAACAAAGATCTGCAT 347 >seq19544 Length=280 Score = 129 bits (142), Expect = 4e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| | ||| | || |||||||| ||||| || || || || |||||||| | Sbjct 50 CCTCCTCTAAGTCTAAGTACCAAATGAAGAGTGGACTCCTTCTGGATATTGTAATCAGAT 109 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | |||| | ||||||||||| || || || | ||||| | |||||| || ||| Sbjct 110 AAGGTTCTTCCATCTTCTAATTGCTTTCCTGCAAAGATCAATCTTTGTTGATCTGGTGGG 169 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| || || ||| || |||||||| | || || |||||| | ||| || Sbjct 170 ATACCTTCCTTATCTTGAATCTTAGTCTTTACATTATCAATAGTATCGGATTGTTCGACG 229 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15367 || | ||||||||| || || |||| || |||||||| || ||||||||| Sbjct 230 TCAAGGGTAATGGTCTTTCCAGTCAAGGTCTTTACAAAGATCTGCATATTT 280 >seq44811 Length=222 Score = 89.7 bits (98), Expect = 4e-13 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| | ||| | || || || || || || || || || |||||||| ||| Sbjct 47 CCTCCTCTAAGTCTGAGGACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAG 106 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| |||| ||||||| ||||| || ||||| | || | | |||||| || |||| Sbjct 107 AGAGTTCTACCGTCTTCCAATTGCTTTCCAGCAAAGATAAGTCTTTGTTGATCTGGTGGA 166 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATC 15303 |||||||||||||| ||| || |||| || | || |||||||| Sbjct 167 ATTCCTTCTTTGTCCTGAATCTTAGTCTTAACGTTGTCAATGGTATC 213 >seq87644 Length=678 Score = 86.0 bits (94), Expect = 5e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 15133 TCTGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC 15192 || ||||||||| ||||| | || | ||||||||| || ||||| || || ||||| || Sbjct 380 TCCGCCACCTCTTAATCTGAGGACGAGATGAAGGGTAGATTCTTTCTGAATATTGTAGTC 321 Query 15193 GCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTT 15252 || |||| | ||||||||||| || || || | || || | |||||| || Sbjct 320 AGATAAGGTTCTTCCATCTTCTAATTGCTTTCCGGCAAAGATTAATCTTTGTTGATCTGG 261 Query 15253 TGGAATTCCTTCTTTGTCACAAATTTT 15279 |||||||||||||| || |||||| Sbjct 260 AGGAATTCCTTCTTTATCTTGAATTTT 234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361697396632032