Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_004813.1 Length=57930 Score E Sequences producing significant alignments: (Bits) Value seq19195 84.2 8e-12 >seq19195 Length=277 Score = 84.2 bits (92), Expect = 8e-12 Identities = 134/190 (71%), Gaps = 7/190 (4%) Strand=Plus/Minus Query 29108 CAATGTGGAAATTGGTCTTGCCCTGCGTTCTGACCGCTGGACGGGTGCGGATTTCTGGGA 29167 |||||||||||| || |||| |||| || || |||||| || || |||| |||| Sbjct 212 CAATGTGGAAATCGGGCTTGGACTGCACTCAGATCGCTGGCGTGGGGCTGATTACTGGTT 153 Query 29168 GCAGCAGGGCAGG---CGCGTCAGCC--TGGACGATATCCTGCAGCGCGCTGATGTGGTG 29222 || | | ||||| || || | | |||| || | | |||| |||| || Sbjct 152 GCTG--GCGCAGGATCCGGGTTTGACGCTGGATGAGCTGATCGAGCGGTCTGAAGTCTGC 95 Query 29223 ACGGTGGGGATTGACGGCGGGGGCCTGGATGATCTGCTGGGAATGTACGTGATTGGCCGT 29282 ||| |||| ||||| ||||| |||||||| ||||||||||| || ||| | |||||| Sbjct 94 ACGATGGGCATTGATGGCGGCGGCCTGGACGATCTGCTGGGGCTGACGGTGCTGGGCCGT 35 Query 29283 GACAGGGAAA 29292 |||| ||||| Sbjct 34 GACAAGGAAA 25 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 185014276951808