Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_005066.1 Length=164018 Score E Sequences producing significant alignments: (Bits) Value seq42898 98.7 1e-15 >seq42898 Length=225 Score = 98.7 bits (108), Expect = 1e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 133193 AATGTATTGTGTGCCTTTTAAGTGAAGTTGTTCATCACGCGCAATAAATTTCATGATCTT 133252 ||| | ||| || || ||||||| | | |||||||||||| || || || || ||||| Sbjct 3 AATATGTTGAGTACCGGTTAAGTGTAATGCTTCATCACGCGCTATTAACTTAATTATCTT 62 Query 133253 CGCGTTACCTTCCAGTAAACCACGTTCGGCAAAGCTGAAAGTACATGCAAAGGACACATA 133312 ||| || ||||| || || | ||||| ||||| |||| ||| |||||| ||||| Sbjct 63 CGCATTGCCTTCAAGCAATTCGCGTTCAGCAAAAGCAAAAGAACAAGCAAAGCTAACATA 122 Query 133313 AAAACGGATTGCTTCCAGTGCATTTAC 133339 ||| ||||| ||||| || ||||| || Sbjct 123 AAATCGGATGGCTTCAAGCGCATTAAC 149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 524013658933760