Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq97248 125 5e-24 seq19544 104 2e-17 >seq97248 Length=461 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||| | ||| | |||||||| || ||| |||||| ||||| || ||||| | Sbjct 409 CCTCCTCTGAGTCTAAGGACCAAATGAAGAGTGGACTCTTTCTGAATGTTGTAATCAGAT 350 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 ||| | |||| || ||||| ||||| || || ||||| | || || || | || Sbjct 349 AATGTTCTTCCATCTTCTAATTGCTTTCCAGCGAAGATCAATCTCTGTTGATCTGGTGGG 290 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | |||||||| ||| ||| || ||||| | ||| |||||||| |||| ||| Sbjct 289 ATGCCTTCTTTGTCTTGAATCTTAGTCTTGACGTTGTCAATAGTATCTGATTGCTCAACA 230 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | |||||||| ||||| ||||||||||| || || |||||||| Sbjct 229 TCTAAGGTAATTGTCTTACCAGTTAAAGTCTTTACGAAGATTTGCAT 183 >seq19544 Length=280 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||| | ||| | |||||||| || ||| ||| || || ||||| ||||| | Sbjct 50 CCTCCTCTAAGTCTAAGTACCAAATGAAGAGTGGACTCCTTCTGGATATTGTAATCAGAT 109 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 || | |||| || ||||| ||||||||||| ||||| | ||| || || | || Sbjct 110 AAGGTTCTTCCATCTTCTAATTGCTTTCCTGCAAAGATCAATCTTTGTTGATCTGGTGGG 169 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | |||||| |||||| ||| || || || || ||| |||||| | | || || Sbjct 170 ATACCTTCCTTATCTTGAATCTTAGTCTTTACATTATCAATAGTATCGGATTGTTCGACG 229 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| || || || || || ||||| ||||| || ||||| Sbjct 230 TCAAGGGTAATGGTCTTTCCAGTCAAGGTCTTTACAAAGATCTGCAT 276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354305642906496