Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_005135.1 Length=173591 Score E Sequences producing significant alignments: (Bits) Value seq12675 113 5e-20 seq60406 102 9e-17 seq83193 100 3e-16 seq63577 93.3 5e-14 seq106981 89.7 6e-13 seq13005 89.7 6e-13 seq32736 87.8 2e-12 seq64863 86.0 7e-12 >seq12675 Length=304 Score = 113 bits (124), Expect = 5e-20 Identities = 133/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 6475 GCGGAGAGCTTCACCAAAACAAACTGCTTTCGCTGCGATAACATGAAGAAGCGGGCCGCC 6534 ||| ||||| || ||||| ||| || || || || || ||||| | | |||||||| Sbjct 124 GCGCAGAGCCTCGCCAAATGCAACGGCCTTTGCGGCAATTACATGCATCAAAGGGCCGCC 183 Query 6535 TTGAATACCCGGGAAGATAGCAGAATTTACTTTCTTGGCGATATCAGCATCGTTAGTAAG 6594 ||||| || || ||||| || || |||||||| || |||||| | ||||||| || || Sbjct 184 CTGAATGCCTGGAAAGATTGCGGAGTTTACTTTTTTCGCGATAGCCTCATCGTTTGTGAG 243 Query 6595 AATGAGGCCACCACGAGGGCCGCGCAAAGTTTTATGAGTTGTAGTAGTAACAACGTCGGC 6654 || | ||| || ||||||||||||| ||||| || || || || || || | ||||| Sbjct 244 GATCATGCCGCCGCGAGGGCCGCGCAGGGTTTTGTGCGTCGTGGTGGTCACGATATCGGC 303 >seq60406 Length=4803 Score = 102 bits (112), Expect = 9e-17 Identities = 127/174 (73%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 6482 GCTTCACCAAAACAAACTGCTTTCGCTGCGATAACATGAAGAAGCGGGCCGCCTTGAATA 6541 ||||| |||||| ||| ||||| | ||||||||||| | | || ||||| |||||| Sbjct 3834 GCTTCGCCAAAAGCAACAGCTTTACCAGCGATAACATGCATCAAAGGACCGCCCTGAATA 3775 Query 6542 CCCGGGAAGATAGCAGAATTTACTTTCTTGGCGATATCAGCATCGTTAGTAAGAATGAGG 6601 || || || | ||| ||||| | |||||| ||||| | |||| || || | | ||| Sbjct 3774 CCTGGAAATACAGCCGAATTGATTTTCTTTGCGATCGCCTCATCATTGGTCAACACAAGG 3715 Query 6602 CCACCACGAGGGCCGCGCAAAGTTTTATGAGTTGTAGTAGTAACAACGTCGGCA 6655 || || || || |||||||| ||||| || ||||| | ||| | || | |||| Sbjct 3714 CCGCCGCGTGGCCCGCGCAAGGTTTTGTGCGTTGTTGAAGTGGCCACATGGGCA 3661 >seq83193 Length=848 Score = 100 bits (110), Expect = 3e-16 Identities = 173/251 (69%), Gaps = 3/251 (1%) Strand=Plus/Minus Query 6476 CGGAGAGCTTCACCAAAACAAACTGCTTTCGCTGCGATAACATGAAGAAGCGGGCCGCCT 6535 || || ||||| ||||| || || || |||||||| ||||| | ||||| || ||| Sbjct 745 CGCAGCGCTTCTCCAAACGCCACGGCCTTGGCTGCGATGACATGCATCAGCGGACCACCT 686 Query 6536 TGAATACCCGGGAAGATAGCAGAATTTACTTTCTTGGCGATATCAGCATCGTTAGTAAGA 6595 || | || ||||| | || ||||| | ||| || | | | || ||||| | || Sbjct 685 TGCAGGCCGGGGAAAACGGCGGAATTGAATTTTTTACCCAAGGCCGCGTCGTTGGACAGG 626 Query 6596 ATGAGGCCACCACGAGGGCCGCGCAAAGTTTTATGAGTTGTAGTAGTAACAACGTCGGCA 6655 || | ||||||||| || ||||||| ||||||||||| || ||||| | |||| ||| Sbjct 625 ATCATGCCACCACGCGGACCGCGCAGGGTTTTATGAGTCGTGGTAGTGGCCACGTGCGCA 566 Query 6656 CCCCATTTGAGTGGATTAGCGTGAAGACGAGCAGCAACAAAGCCAGCAAAATGGGCCATA 6715 | | || || || | || | | | ||||| | || |||||||| ||||| Sbjct 565 TGC---TCCAGCGGGTTGGGATGCACTCCGCCGGCAACCAGCCCGGCAAAATGAGCCATG 509 Query 6716 TCGACCATCAA 6726 |||||||| || Sbjct 508 TCGACCATGAA 498 Score = 87.8 bits (96), Expect = 2e-12 Identities = 155/223 (70%), Gaps = 6/223 (3%) Strand=Plus/Minus Query 7013 ACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTGCGAAATTGCAACTAAAC 7072 || |||||||| || | || ||| ||||| |||||||| || || | | ||| | ||| Sbjct 220 ACCGCCTGGTTGGCATTTGCACCCGAATGGGGTTGAACATTGGCATATTCGCAGTTGAAC 161 Query 7073 AGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATTTCA---TCGGCTTTTACGCAGCCG 7129 | | || |||| |||||||| |||| | || ||| | | | |||| ||| Sbjct 160 AACTGGCAGGCCCGCTTGATTGCCAG-TTCTTCAG--CAATGTCGACATATTCGCAACCG 104 Query 7130 CCATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTGGTAAAAATAGAACCCTGT 7189 |||||||| || |||||||||| ||||| ||||| |||||||| | | ||||| || Sbjct 103 CCATAATATCGCCTGCCCGGATAACCCTCGGCATATTTGTTGGTCAGCACTGAACCTTGC 44 Query 7190 GCTTTCATAACATCGTCTGACACATAGTTTTCGGACGCAATCA 7232 |||| || || | |||||| || || || ||||||| Sbjct 43 GCTTCCAGCACGGCACGCGACACAATATTCTCCGAGGCAATCA 1 >seq63577 Length=2854 Score = 93.3 bits (102), Expect = 5e-14 Identities = 198/296 (67%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 6938 CCGTGAGTGAGATGGCCGCCGCAGTCCAAGGACATAGCGAGAACCGAATCACCCGGCTTC 6997 |||||||| | |||||| || ||| ||| |||| | || || | |||||| || ||| Sbjct 803 CCGTGAGTTAAATGGCCTCCATGGTCTAAGCTCATACCCAGCACAGTATCACCGGGGTTC 862 Query 6998 AGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTGCG 7057 | | |||||||| || || || ||| || || || || || ||||| || ||| Sbjct 863 AAAACCGCTTGGTATACCGCGATATTCGCTGACGACCCTGAGTGTGGCTGAACATTGGCG 922 Query 7058 AAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATTTCATCGGCT 7117 ||| | |||| |||||| ||| | ||||||| || ||| ||||| | Sbjct 923 TAATCAGCCCCGAACAATTCTTTTAAACGAGCTATTGCCAAGTCTTCGGCGACATCGACA 982 Query 7118 TTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTGGTAAAA 7177 | |||| ||||||||||| || || || ||||| || || || || || || |||| Sbjct 983 TAAGCGCAACCGCCATAATAACGCTTACCAGGATAGCCTTCGGCGTATTTATTAGTAAGC 1042 Query 7178 ATAGAACCCTGTGCTTTCATAACATCGTCTGACACATAGTTTTCGGACGCAATCAA 7233 | | ||||| || | ||| || | | | |||||||||| || || || || Sbjct 1043 TTTGTGCCCTGCGCCTGCATTACCGCTGCGCTCGCATAGTTTTCAGATGCGATTAA 1098 >seq106981 Length=382 Score = 89.7 bits (98), Expect = 6e-13 Identities = 110/149 (74%), Gaps = 1/149 (1%) Strand=Plus/Minus Query 6491 AAAC-AAACTGCTTTCGCTGCGATAACATGAAGAAGCGGGCCGCCTTGAATACCCGGGAA 6549 |||| |||| || ||||| || || |||||| | || || || ||| ||| ||||| Sbjct 152 AAACGAAACAGCCTTCGCCGCAATCACATGACACAAAGGCCCACCCTGACCACCAGGGAA 93 Query 6550 GATAGCAGAATTTACTTTCTTGGCGATATCAGCATCGTTAGTAAGAATGAGGCCACCACG 6609 | || ||||| | |||||| |||| || || ||||| ||||| | ||||||||| Sbjct 92 TACTGCTGAATTAATTTTCTTTGCGAGCTCTTCACTATTAGTGAGAATAATGCCACCACG 33 Query 6610 AGGGCCGCGCAAAGTTTTATGAGTTGTAG 6638 |||||| |||| |||||| || || |||| Sbjct 32 AGGGCCACGCAGAGTTTTGTGGGTAGTAG 4 >seq13005 Length=299 Score = 89.7 bits (98), Expect = 6e-13 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 6986 TCACCCGGCTTCAGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGT 7045 ||||| || |||| | || |||||| || |||||||||||||| || || || ||| Sbjct 243 TCACCAGGTTTCAACATCGCAAAGTAAACAGCTTGGTTTGCTTGTGAGCCAGAGTGTGGT 184 Query 7046 TGAACGTTTGCGAAATT--GCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCT 7103 || ||||| || | ||| || || | |||| |||| ||| ||||| |||| | | Sbjct 183 TGCACGTTGGC-ATATTCAGC-ACCATACAGCGCTTTTAAACGGTCAATCGCCAATTGTT 126 Query 7104 CGATTTCATCGGCTTTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCAT 7163 | | || || | | | | || || |||||| | ||||| || ||||| || || |||| Sbjct 125 CTACTTGGTCAACATATTCACATCCACCATAAAAGCGTTTACCTGGATAACCTTCTGCAT 66 Query 7164 ACTTGTTGGTAAAAATAGAACCCTGTGCTTTCATAAC 7200 | || ||||| || || || ||||||| ||| || Sbjct 65 ATTTATTGGTTAACTGCGAGCCTTGTGCTTCCATCAC 29 >seq32736 Length=245 Score = 87.8 bits (96), Expect = 2e-12 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 6470 TCTTCGCGGAGAGCTTCACCAAAACAAACTGCTTTCGCTGCGATAACATGAAGAAGCGGG 6529 || |||| |||||||| || ||| || ||||| | || || ||||| | | || Sbjct 188 TCATCGCTCAGAGCTTCGCCGAAAGCGACAGCTTTACCGGCAATGACATGCATCAATGGA 129 Query 6530 CCGCCTTGAATACCCGGGAAGATAGCAGAATTTACTTTCTTGGCGATATCAGCATCGTTA 6589 ||||| || | || || |||| |||||||| | ||||||||| || | |||| || Sbjct 128 CCGCCCTGCAATCCGGGAAAGACCGCAGAATTGATTTTCTTGGCAATGGCCTCATCATTG 69 Query 6590 GTAAGAATGAGGCCACCACGAGGGCCGCGCAAAGTTTTATGAGTTGTAGTAGTAACAACG 6649 || || | | |||||||| || ||||||| ||||||||||| || | || |||| Sbjct 68 GTCAGCACCAATCCACCACGGGGACCGCGCAGGGTTTTATGAGTGGTGGATGTTGCAACA 9 Query 6650 TCGGCA 6655 | |||| Sbjct 8 TGGGCA 3 >seq64863 Length=2526 Score = 86.0 bits (94), Expect = 7e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 7022 TTTGCTTGTGAACCGGAATGAGGTTGAACGTTTGCGAAATTGCAACTAAACAGTTCTTTA 7081 |||||||| | ||| || ||||||||||| ||||| | | | ||| | || | Sbjct 730 TTTGCTTGAGCACCTGAGTGAGGTTGAACATTTGCCCATTCCGCTCCAAATAATTTACAA 789 Query 7082 GCACGCTCAATTGCCAGGTTCTCGATTTCATCGGCTTTTACGCAGCCGCCATAATACCGT 7141 ||| |||||||| | ||| ||||||| ||| | | | || || |||||||| ||| Sbjct 790 AGACGTTCAATTGCTAAGTTTTCGATTTTATCTACAACTTCACAACCACCATAATAACGT 849 Query 7142 TTGCCCGGATATCCCTCAGCATACTTGTTGGTAAAAATAGAACCCTGTGCTTTCATAACA 7201 || || ||| || |||||||||||||| |||| | | ||| |||| |||||| Sbjct 850 TTTCCTGGAAGACCTTCAGCATACTTGTTTGTAAGTACACTTCCCATAGCTTCCATAACT 909 Query 7202 TCGTCTGACACATAGTTTTCGGACGCAATCAA 7233 | || ||| | ||||| || ||||| || Sbjct 910 TGATCACTCACGAAATTTTCCGAAGCAATTAA 941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554605462449920