Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq59922 306 3e-78 seq75063 132 4e-26 >seq59922 Length=6033 Score = 306 bits (338), Expect = 3e-78 Identities = 527/753 (70%), Gaps = 33/753 (4%) Strand=Plus/Minus Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918 |||||| ||||| | |||||| |||||||| ||||| ||||| |||| | ||||| | Sbjct 1148 TTTTTGGTATTCACCAACTCTCTTTTCAAAGAAGTTCGTTTTCCCTTGAATTGAAATCAT 1089 Query 12919 TTCCATAAAATCGAAAGGATTTTTCGAAC--AATAGTATTT--TTTACACCCTAATTCTA 12974 |||||| ||||| || || ||| ||| |||| | ||| ||| |||||||| | Sbjct 1088 TTCCATGAAATCAAATGGGTTTGTCGCGTTGAATACTTTTTCGTTT----CCTAATTCCA 1033 Query 12975 GTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTA 13034 || ||||| |||||||||||||| ||||| || ||| ||||||| ||||||||| | Sbjct 1032 ACAATAATCTATCAGCAACAAACTCAATGTATTGCGACATCAAATCACTGTTCATTCCGA 973 Query 13035 TTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTC---GA 13091 |||| || || || | ||||| | ||| | ||| || || |||||||| || || Sbjct 972 TTAACTTAACGGGAAGTGCTTCAAGAATAAATTCTTTCTCAATTTCAACTGCGTCAAGGA 913 Query 13092 TAACTATGTCTCTTATTACGTT----CTCTAATGGAGGATTTGATAGATGCTTAAACATC 13147 ||| | | | | || | || | || | ||| || | | || ||| Sbjct 912 TAATTTTCTGAACTGTTTCCTTTGGAAGTTTATCAACGATGTGGTTGGTGTATAA----T 857 Query 13148 ATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTT 13207 | |||||| |||||||||||||||||||| ||||| |||| |||||| || || | Sbjct 856 AAACATGCGAAATCACAGTGCAATCCTTCGTCTCTTGAGATTAACTCGTTAGAGAAAGAA 797 Query 13208 AGACCCGGCATAAGCCCTCGTTTTTTAATCCA--AAATATAGCAGCAAACGAACCCGaaa 13265 || || ||||| || |||| ||| || | ||| |||| | ||| || ||||| || | Sbjct 796 AGCCCTGGCATCAGTCCTCTTTTCTTCAACCAGTAAATTGAACAG--AAAGAACCTGAGA 739 Query 13266 aaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTAC 13325 | || |||||||| ||||||||||| || | | ||||| || | | || || Sbjct 738 AGAAAATTCCTTCCACTGCTGCAAATGCAACAAGTCTTTCTGCAAATG----ATCCTT-- 685 Query 13326 TCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTG 13385 || ||||| ||||| | ||||||| ||||| || | ||| | || || | Sbjct 684 CATCAATCCAACGCAAAGCCCAATCTGCTTTTACCTTAACACATTCCATTGTGTCAATAG 625 Query 13386 CGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGC-TA 13444 | ||||| ||||| | ||| ||||| ||||| ||| ||||||||||| || |||| | Sbjct 624 CATTAAACAAATATTCTTTGTCCTTCGTGTCTTTAATGTAAGTATCTATTAA-AAGCGAA 566 Query 13445 TACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCT 13504 ||| |||| || ||||| ||||| | |||| |||||| || || ||| || | ||||| Sbjct 565 TACGTTTCAGAGTGAATGTTTTCAACTGCTACTTGGAACCCGTAGAAAAATTTTGCCTCA 506 Query 13505 G-ATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACT 13563 | ||| ||||||||| || | || | |||||||||||||| || || || || || Sbjct 505 GTATA-CTGAACTTCTGACAAGAAATTCTCTGCTAAGTTTTCATTTACAATTCCATCTGA 447 Query 13564 AGCAGCaaaaaaaGCAAGTATGTGCTTAATAAA 13596 || || |||||||| | || || |||| ||| Sbjct 446 TGCCGCGAAAAAAGCCAATACATGTTTAACAAA 414 >seq75063 Length=1318 Score = 132 bits (146), Expect = 4e-26 Identities = 433/662 (65%), Gaps = 13/662 (2%) Strand=Plus/Plus Query 12842 TTTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTT 12901 ||||||||||| ||||||||| || || ||| || |||| || || || |||||| Sbjct 96 TTTGACATAACCCCTGCTTTTTGATACTCACTTACTTTTCTTTCGAAGAAATTAGTTTTT 155 Query 12902 CCTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTT-T 12960 |||| | ||||| | ||||| | ||||| ||||| | | ||| ||| | Sbjct 156 CCTTGAAGTGAAATCATGTCCATCCATTCGAATGGATTAACTGCATTGAAGTGCTTTGGT 215 Query 12961 ACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATC 13020 || || | | || | | ||| |||||||||||||| || || ||| ||| | | Sbjct 216 ACTCCAAGAGTAAAGAGA-AGTCTATCAGCAACAAACTCAATATATTGTCCCATAAGTTT 274 Query 13021 ACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATC 13080 | ||||| || || | || ||| |||| || ||| | || ||| | || || | Sbjct 275 GCTATTCATACCAATAAGTTCTACGGGCAAAGATTCAGATACAAATTCAAGCTCAATTGC 334 Query 13081 AACTGCTTCGATAACTATGTCTCTTATTACGTTC-TCTAATGGAGGATTTGATAGATGCT 13139 |||||||| | | || || ||| | ||| | | || ||| | ||| | Sbjct 335 TACTGCTTCAGTCAAAATTTCATAAATT-CTTTCATTTGATACCTTATTAACCATATGTT 393 Query 13140 TAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTG 13199 || ||| || ||| ||||| ||| || ||||| |||||||| || | ||| || | Sbjct 394 TATACAACAAACAAGCAAAGTCAGTATGTAATCCCTCATCTCTTGAGATCAACTCATTAG 453 Query 13200 AAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAAC 13259 | || || || |||||||| || ||||| | ||| || || || ||| || | Sbjct 454 AGAAACAAAGGCCTGGCATAAGAGATCTCTTTTTCAACCAGAAAATTGCGCAAAAAGACC 513 Query 13260 CCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTAT 13319 | || || || |||||||| || |||||||| ||||| |||||| || | | || Sbjct 514 CAGAGAAGAAAATTCCTTCTACACAAGCAAACGCAATCAATCTTTCAGCAAATGAGTCAT 573 Query 13320 TTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTC--ATATT 13377 | ||| | ||||| || ||||||| || || | ||||| |||| ||||| Sbjct 574 TCTTATTA---ATCCATTTAAAAGCCCAGTCAGCCTTCTTCTTAAC--AGTTTCAATATT 628 Query 13378 TTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAA 13437 || || || ||||| | ||| |||||| || || |||||||||||| || || Sbjct 629 ATCAATAGCCTTAAAAAGGAAATCTTTTTCTTTGAGATCACTAATATAAGTATCAAT-AA 687 Query 13438 TAAGCTA-TACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATC 13496 || | || |||| |||| ||| |||||| ||||||| ||||| || |||| Sbjct 688 GGAGAGAGTAAGTTTCACTGTGAACATTCTCCATCATACTTTGGAAGCCATAGAAGCATC 747 Query 13497 TA 13498 || Sbjct 748 TA 749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430409068423104