Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_005262.3 Length=63882 Score E Sequences producing significant alignments: (Bits) Value seq59983 95.1 5e-15 >seq59983 Length=5794 Score = 95.1 bits (104), Expect = 5e-15 Identities = 226/342 (66%), Gaps = 0/342 (0%) Strand=Plus/Plus Query 10121 AAGCAACTTGGAGGGAATAATGGCAAGCGTAAACAAGGTAATTTTGGTTGGAAACTTAGG 10180 |||||| | |||| | ||||||| | |||||||| |||||| | ||||| || || || Sbjct 15 AAGCAAATCGGAGCAGAAAATGGCAGGTGTAAACAAAGTAATTATCGTTGGTAATTTGGG 74 Query 10181 GGCCGATCCTGAAGTCCGTTACCTGCCGAGCGGCGACGCGGTTGCGAACATCCGTCTCGC 10240 ||| || ||||| ||||| | | ||||| |||| |||| |||||| | | || Sbjct 75 TAACGACCCAGAAGTTCGTTATTCGAACAACGGCGCCGCGATTGCAAACATCAGCGTAGC 134 Query 10241 GACGACCGATCGATACAAGGACAAGGCGAGCGGCGACATCAAGGAGGCGACTGAATGGCA 10300 || | || | || |||||| | |||||| | | ||| || || ||||| Sbjct 135 AACATCGGAAAATTGGAAAGACAAGAACACCGGCGAGCGCCAAGAGCGCACCGAGTGGCA 194 Query 10301 CCGCGTCTCGTTCTTCGGTCGGCTGGCTGAGATCGTCGACGAGCACCTGCGCAAGGGCGC 10360 | || | || ||| ||| || | || | | || |||| |||| |||||| | Sbjct 195 TAGAATCACCTTGTTCAATCGCCTTGGCGAAGTGGCCGGCGAGTACCTTAAAAAGGGCTC 254 Query 10361 ATCTGTCTACATCGAGGGGCGCATCAAGACGCGGAAGTGGCAGGATCAATCCGGCCAGGA 10420 | ||||||||||| || | | || || || |||||||||| || | || Sbjct 255 AAAGGTCTACATCGAAGGCAAGTTACAAACCCGAAAATGGCAGGATCCGCAGGGTAATGA 314 Query 10421 TCGTTACACGACCGAGATCGTCGCTGACCGCATGCAGATGCT 10462 ||||||| | ||||| || | || |||| ||||| ||||| Sbjct 315 TCGTTACTCAACCGATATTATTGCCGACCAAATGCAAATGCT 356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 204025824945696