Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq59922 201 3e-46 seq108602 192 1e-43 seq97248 158 3e-33 seq75063 150 4e-31 seq44811 149 1e-30 seq87644 145 2e-29 seq94139 111 4e-19 seq56753 98.7 2e-15 seq88500 95.1 3e-14 >seq59922 Length=6033 Score = 201 bits (222), Expect = 3e-46 Identities = 589/890 (66%), Gaps = 22/890 (2%) Strand=Plus/Plus Query 268700 AGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTT 268759 |||||||| |||||||||| || || | ||| || ||| | |||||| |||||| Sbjct 270 AGATTTGTTCTATTTCCAATTCAACACGATGACATTTGGGCTTTCTACAAAAAGGCCGAA 329 Query 268760 GCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAA-- 268817 ||| ||| ||||| | ||||| | ||||| |||||||| |||||| | | Sbjct 330 GCTAGTTTCTGGACAGCCGAAGAGATTGATCTTCAAGCCGACTTAATTGATTGGGATACG 389 Query 268818 ATTTAAAACCAGAA-GAAAGAAGATTTAT--ATCTTATATTCTTGCGTTTTTTGCAGTTA 268874 | ||| | || ||| | ||| | | | | |||| || ||||| || | Sbjct 390 AAGCTGAACGATAATGAACGTCATTTTGTTAAACATGTATTG--GCTTTTTTCGCGGCAT 447 Query 268875 GTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCT-GTCAAGAGGTACAGATTCCT 268933 ||||| || || || ||||| ||| |||||| |||| |||| || || ||| | || Sbjct 448 CAGATGGAATTGTAAATGAAAACTTAGCAGAGAATTTCTTGTCA-GAAGTTCAGTATACT 506 Query 268934 GAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTAC 268993 || || | || ||| ||||| ||||| |||| | ||||| ||||| || || | ||| Sbjct 507 GAGGCAAAATTTTTCTACGGGTTCCAAGTAGCAGTTGAAAACATTCACTCTGAAACGTAT 566 Query 268994 AGTCTATTAATAGATACTTATATAGATGATAACAACGA-AAAGAAAAGACTATTTTCTTC 269052 || |||||||||||||| || | || | || || |||||| | | ||| | | Sbjct 567 TCGCTTTTAATAGATACTTACATTAAAGACACGAAGGACAAAGAATATT-TGTTTAATGC 625 Query 269053 TATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGA 269112 ||| || ||||| ||||| | |||| | || |||||| || ||||| | || Sbjct 626 TATTGACACAATGGAATGTGTTAAGGTAAAAGCAGATTGGGCTTTGCGTTGGATTGATGA 685 Query 269113 TAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTC 269172 || | | || | |||||| | ||||| ||||| || || ||||| || ||||| || Sbjct 686 -AG-GATCATTT-GCAGAAAGACTTGTTGCATTTGCAGCAGTGGAAGGAATTTTCTTCTC 742 Query 269173 GGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTT 269232 || ||||| | || | ||||||||||||||||| || |||||||| | |||| Sbjct 743 AGGTTCTTTCTGTTCAATTTACTGGTTGAAGAAAAGAGGACTGATGCCAGGGCTTTCTTT 802 Query 269233 CTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTATT 269292 ||||||||| || || || |||||||| || ||||| || ||||| |||||||||| Sbjct 803 CTCTAACGAGTTAATCTCAAGAGACGAAGGATTGCACTGTGATTTCGCATGTTTATTATA 862 Query 269293 TACTAA--TTATCTTTCACACAAACCTTCTCAAGATAGAGTATACGAAATTATAGATTCA 269350 || || ||| || | |||| | | | || | ||| | ||||||| | Sbjct 863 CACCAACCACATCGTT--GATAAACTTCCAAAGGAAACAGTTCAGAAAATTATCCTTGAC 920 Query 269351 GCTGTTTCTGTAGAAACAGAATTTCTAACGGAAGCTCTATCTATCGATCTTATCGGTATG 269410 || ||| | || | ||||||| | ||||| || | | | | ||||| ||| Sbjct 921 GCAGTTGAAATTGAGAAAGAATTTATTCTTGAAGCACTTCCCGTTAAGTTAATCGGAATG 980 Query 269411 AATAGCAAATCGATGATAGAATATATTAAGTTCGTATCTGATAGATTGCTGGTGTCTTTA 269470 || || | | |||| |||| ||| |||| || |||||||||| || || ||| Sbjct 981 AACAGTGATTTGATGTCGCAATACATTGAGTTTGTTGCTGATAGATTATTGTTGGAATTA 1040 Query 269471 GGGTTTAGTAAAAAATAT--AACGTTGAAAATCCGTTTAGTTTTATGGAGAATATATCAT 269528 || | ||||| ||| |||| ||| || ||| ||| ||||| | || ||| Sbjct 1041 GG--AAACGAAAAAGTATTCAACGCGACAAACCCATTTGATTTCATGGAAATGATTTCAA 1098 Query 269529 TAGAAGGTAAGGCTAATTTCTTCGAGAAGCGGGTAAGTAACTATCAGAAA 269578 | |||| || | || ||||| || ||| | || || | || || ||| Sbjct 1099 TTCAAGGGAAAACGAACTTCTTTGAAAAGAGAGTTGGTGAATACCAAAAA 1148 >seq108602 Length=371 Score = 192 bits (212), Expect = 1e-43 Identities = 180/229 (79%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 ||| ||||| || || || || | ||| | ||||||||||| ||||| ||||| || || Sbjct 120 TCCTCCTCTAAGTCTGAGGACCAAATGGAGAGTAGATTCTTTTTGAATGTTATAATCTGA 179 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 |||||||||||||||||||| ||||||||||||||| || || |||||||| || || || Sbjct 180 TAGAGTTCTACCGTCTTCTAATTGTTTTCCAGCAAAGATAAGTCTCTGTTGGTCTGGTGG 239 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTAC 104511 ||||| |||||||| |||||||| | || ||||| || | ||| || |||| || Sbjct 240 AATTCCCTCTTTATCTTGAATCTTAGTCTTGACATTGTCGATGGTGTCAGATTGTTCAAC 299 Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 |||| || || || || |||||||| || || ||||| ||||||||| Sbjct 300 ATCTAAGGTGATGGTTTTTCCAGTAAGAGTCTTAACAAAGATCTGCATT 348 >seq97248 Length=461 Score = 158 bits (174), Expect = 3e-33 Identities = 189/253 (75%), Gaps = 3/253 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| || ||||| || | ||| | || || ||||||||||| || || ||| Sbjct 412 ATTCCTCCTCTGAGTCTAAGGACCAAATGAAGAGTGGACTCTTTCTGAATGTTGTAATCA 353 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| ||||| || ||||||| ||| |||||||| || || | ||||||||||| || Sbjct 352 GATAATGTTCTTCCATCTTCTAATTGCTTTCCAGCGAAGATCAATCTCTGTTGATCTGGT 293 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| || |||||||| | || || || || | ||||| | || Sbjct 292 GGGATGCCTTCTTTGTCTTGAATCTTAGTCTTGACGTTGTCAATAGTATCTGATTGCTCA 233 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT-TTTG-TGTA 104567 || |||| ||||| ||||||||||| | || ||||| || || ||||| |||| | || Sbjct 232 ACATCTAAGGTAATTGTCTTACCAGTTAAAGTCTTTACGAAGATTTGCATATTTGTTATA 173 Query 104568 CAGTA-TTTATTA 104579 | || ||||||| Sbjct 172 AAATATTTTATTA 160 >seq75063 Length=1318 Score = 150 bits (166), Expect = 4e-31 Identities = 561/870 (64%), Gaps = 22/870 (3%) Strand=Plus/Minus Query 268778 GAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAAT---TTAAAACCAGAAGAA 268834 ||||| ||||| || ||| || |||| ||||||||| || ||||| || || Sbjct 913 GAAGAGATAGATTTGGCTTCAGATTTAAAAGATTGGAATGATAAATTAAATGATGATGAG 854 Query 268835 AGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAA 268894 ||| || || || | ||||| || || || | | |||||| || || || Sbjct 853 AGACACTTCATCAAATACGTGCTTGCTTTCTTCGCTGCTTCTGATGGAATTGTCCTTGAG 794 Query 268895 AATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGA 268954 ||||| | || ||| | || ||||| || ||||||| ||||| || || || Sbjct 793 AATCTTATTGAATGCTTCGCTGCTGAAGTACAAATCCCTGAAGTTAGATGCTTCTATGGC 734 Query 268955 TTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTAT 269014 ||||| | || || ||| |||| || | ||| ||| | || ||||||||| Sbjct 733 TTCCAAAGTATGATGGAGAATGTTCACAGTGAAACTTACTCTCTCCTTATTGATACTTAT 674 Query 269015 ATAGATGATAACAACGAAAAGAAAAGACTATTTTCTTCTAT-GAGAACTATGGACTGTGT 269073 || |||| ||| ||||| | || ||| |||| || || ||| || ||| Sbjct 673 ATTAGTGATCTCAAAGAAAAAGATTTCCTTTTTAAGGCTATTGATAA-TATTGAAACTGT 615 Query 269074 GAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGATAGCGCGCCTTACGGAGAAAG 269133 | || || |||| |||||| | |||||||| || | | | | | | ||||| Sbjct 614 TAAGAAGAAGGCTGACTGGGCTTTTAAATGGATTAATAAGAATGACTCATTTGCTGAAAG 555 Query 269134 GTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTT 269193 || |||| ||||| ||||||||| || ||||| || ||||||||| ||| || || Sbjct 554 ATTGATTGCGTTTGCTTGTGTAGAAGGAATTTTCTTCTCTGGGTCTTTTTGCGCAATTTT 495 Query 269194 TTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAG 269253 |||||||| || ||| ||||||||||| | ||||||||| || ||||| || Sbjct 494 CTGGTTGAAAAAGAGATCTCTTATGCCAGGCCTTTGTTTCTCTAATGAGTTGATCTCAAG 435 Query 269254 GGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTATTTACTAATTATCTTTCACACAA 269313 || || || ||||| ||||| |||||||| || | || | ||| || | || Sbjct 434 AGATGAGGGATTACATACTGACTTTGCTTGTTTGTTGTATA-AACATATGGTT--AATAA 378 Query 269314 ACCTTCTCAAGATAGAGTATACGAAATTATAGATTCAGCTGTTTCTGTAGAAACAGAATT 269373 || | || ||| | || |||||| | | ||| || | | || ||||| Sbjct 377 GGTATCAAATGAAAGAATTTATGAAATTTTGACTGAAGCAGTAGCAATTGAGCTTGAATT 318 Query 269374 TCTAACGGAAGCTCTATCTATCGATCTTATCGGTATGAATAGCAAATCGATGATAGAATA 269433 | || | ||| || | | | || ||||| ||||||||||||||| ||| | |||| Sbjct 317 TGTATCTGAATCTTTGCCCGTAGAACTTATTGGTATGAATAGCAAACTTATGGGACAATA 258 Query 269434 TATTAAGTTCGTATCTGATAGATTGCTGGTGTCTTTAGGGTTTAGTA--AAA--AATATA 269489 |||| |||| || |||||||| | || | || | || |||| ||| | | | Sbjct 257 TATTGAGTTTGTTGCTGATAGACTTCTCTTTACTCTTGG----AGTACCAAAGCACTTCA 202 Query 269490 ACGTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCT 269549 | | | ||||| || | ||||| | || ||| | |||| || ||||||||| Sbjct 201 ATGCAGTTAATCCATTCGAATGGATGGACATGATTTCACTTCAAGGAAAAACTAATTTCT 142 Query 269550 TCGAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTCTACTAAAGA---AGAAA 269606 |||| | |||||| | ||||| ||| || || |||| | ||||| ||| | Sbjct 141 TCGAAAGAAAAGTAAGTGAGTATCAAAAAGCAGGGGTTATGT---CAAAAGACACAGACA 85 Query 269607 ATATTTTCACTACAGATGCAGAATTCTAAT 269636 | | |||| | | |||| || ||||||| Sbjct 84 AGAATTTCGCAGCTGATGATGATTTCTAAT 55 >seq44811 Length=222 Score = 149 bits (164), Expect = 1e-30 Identities = 135/170 (79%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| || || || || | || | |||||||| |||||||| || ||||| Sbjct 44 ATTCCTCCTCTAAGTCTGAGGACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCG 103 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||||||||||||||| | ||| ||||||||||| || || || |||||||| || Sbjct 104 GAGAGAGTTCTACCGTCTTCCAATTGCTTTCCAGCAAAGATAAGTCTTTGTTGATCTGGT 163 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATC 104499 || ||||||||||| ||||||||||| | || || || || | |||||| Sbjct 164 GGAATTCCTTCTTTGTCCTGAATCTTAGTCTTAACGTTGTCAATGGTATC 213 >seq87644 Length=678 Score = 145 bits (160), Expect = 2e-29 Identities = 118/143 (83%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||||| || || || ||||| | |||||||||||||||||||| ||||||||| Sbjct 376 CCACCTCTTAATCTGAGGACGAGATGAAGGGTAGATTCTTTCTGAATATTGTAGTCAGAT 317 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | ||||| || ||||||| ||| ||||| ||||| |||| || |||||||| ||||| Sbjct 316 AAGGTTCTTCCATCTTCTAATTGCTTTCCGGCAAAGATTAATCTTTGTTGATCTGGAGGA 257 Query 104453 ATTCCTTCTTTATCCTGAATCTT 104475 |||||||||||||| ||||| || Sbjct 256 ATTCCTTCTTTATCTTGAATTTT 234 >seq94139 Length=510 Score = 111 bits (122), Expect = 4e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| ||||| |||||| || || | ||||| || ||||| | ||| |||||| Sbjct 146 GTAGACTCTTTTCTAATATTGTAATCTGCAGCTGTTCTTCCATCTTCCAATTGCTTTCCA 205 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||| || || || ||||| || || ||||| || |||||||| || ||||| Sbjct 206 CCAAAAACTAATCTTTGGCTATCAGCTGGGATACCTTCCTTTTCCTGAATTTTGGCTTTG 265 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 | || || | | ||| | |||| || || | ||| ||||| ||||| || || ||| Sbjct 266 ATGTTATCAATAGATTCGTTGTGTTCAACATCGACTGTGATAGTTTTACCTGTTAGAGTT 325 Query 104543 TTTACAAATATCTGCATTTTG 104563 |||||||||| ||||||||| Sbjct 326 TTTACAAATACTTGCATTTTG 346 >seq56753 Length=203 Score = 98.7 bits (108), Expect = 2e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 || ||||| | | ||| | |||||||| |||||||| ||||| ||||||| |||| Sbjct 164 AGTCTAAGGAGCAAATGAAGAGTAGATTCCTTCTGAATGTTATAATCAGATAAGATTCTT 105 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| | ||||||||||||||| | || |||| |||| || | ||||||||| Sbjct 104 CCATCTTCCAATTGTTTTCCAGCAAAGAGGAGTTTCTGATGATTTGGTGAAATTCCTTCT 45 Query 104462 TTATCCTGAATCTTTGCTTTTA 104483 || || || ||||| | |||| Sbjct 44 TTGTCTTGGATCTTAGTCTTTA 23 >seq88500 Length=653 Score = 95.1 bits (104), Expect = 3e-14 Identities = 159/221 (72%), Gaps = 8/221 (4%) Strand=Plus/Plus Query 104365 AGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGC 104424 ||| | | ||||||| || |||||||| |||||||| | |||||| | ||||| || Sbjct 393 AGACTTTCTCTGAATGTTGTAGTCAGAGAGAGTTCTTTCACCTTCTAACTATTTTCTCGC 452 Query 104425 AAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTAC 104484 ||| || | || ||||||| || || ||| |||| || ||||||||||| | | ||| Sbjct 453 AAAGATCAATCTTTGTTGATTTGGTGGAATTTCTTCCTTGTCCTGAATCTTAGTCTCTAC 512 Query 104485 ATTTTCTACGGTATC-GCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAG--TAAGTGT 104541 ||| || | |||| | | | || | |||| ||||||| ||||||| ||||| | Sbjct 513 ATTATCAATACTATCTGATTGCTT-GATATCTATAATAATAGTTTTACCAGTCTAAGT-T 570 Query 104542 TTTTACAAATATCTGCATT-TTG-TGTACAGTATT-TATTA 104579 || | ||| || |||||| ||| | || | |||| ||||| Sbjct 571 TTAAAAAAAGATTTGCATTATTGTTATAAAATATTCTATTA 611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1149788157823616