Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_005344.1 Length=39043 Score E Sequences producing significant alignments: (Bits) Value seq84132 152 1e-32 seq90072 118 3e-22 seq65442 91.5 4e-14 seq76308 84.2 5e-12 >seq84132 Length=808 Score = 152 bits (168), Expect = 1e-32 Identities = 535/819 (65%), Gaps = 35/819 (4%) Strand=Plus/Minus Query 33328 AACAACGGCGAGGTACGCCCAGCGCTTACCCGTCCAGATATAGGTCACATCACCGCACCA 33387 ||| || || | || |||||||| | || |||||||||| ||||| ||||||||||| Sbjct 808 AACGACAGCCAAATAGGCCCAGCGTCTCCCGCTCCAGATATAAGTCACGTCACCGCACCA 749 Query 33388 CACCTGATTTGGCTCGGTCACGGCGAACTGCCTTTCAAGGTAGTTAGGGATAGCAACATG 33447 || | ||| ||||| || ||| |||||| | || || |||||| | || ||||| Sbjct 748 TACTTTATTCGGCTCCGTTACGTTGAACTGACGATCTAGTGTGTTAGGCACCGCCACATG 689 Query 33448 TTCATGACCACCACGTTTATACCGGTGAGTCGGCTGCTGACAGCTGACCAGCCCCAGCTC 33507 || || | | || || ||| ||| |||| ||||| || || | | | Sbjct 688 CTCCTGTCTTGCCTTCTTGTATTTGTGGCCAGGCAGCTGGCAGCTCACTAGTTCTAAGTA 629 Query 33508 TTTCATGAGCCTGCCAGCAAGCCAGCGTCCCATCTG-GTAGCCTCTCCGGGTTGCCATTG 33566 |||||| || | | ||| | || | || || ||| ||||| ||| | || Sbjct 628 TTTCATTAGACGACTAGCCCTATAACGACTCAGCTTAGTA-CCTCTGGCTGTTACGATCT 570 Query 33567 TGGCGATGCTTCTTGCTCCGGCCGAACCGTGGCTGATGCCATGTAGCTCAAGTACCTGAC 33626 || | | |||| ||||| || || |||| ||| | || |||| | |||||| Sbjct 569 CAGCAAGGGTTCTCGCTCCCGCTGAGCCGTTGCTCTCGTCAAA-AGCT----TCCCTGAC 515 Query 33627 TGCGTAATACAGCCCGTC-TGCC-----GTCTGGTTTTT-CAGGACGGTTTTTCCAGTAT 33679 | | || ||| || | ||| | | ||||| || ||| ||| ||| || Sbjct 514 TTGGCTATGCAGTTCGACCTGCTTAGGAGAAAGCTTTTTGCA--ACGCTTTGACCAATAC 457 Query 33680 CTGTAGCTGCTGCGATGAACCCCGAACACATGGCAGAGT-GTGACCACAGGATAATGCGC 33738 | ||||||||||||| || | || || | |||| | | || || | || | | Sbjct 456 TTATAGCTGCTGCGATTCACTTCAAAGACTTTGCAGGCTAGCGAT-ACCGAATGGCTCTC 398 Query 33739 TCTGAGTTTCCCGATTATCGAGAACTGTTCAGGGAGTCTGACATCAAGAGCGCGGTAGCC 33798 | ||| | | | | || || |||| ||| ||||| ||||||||||| ||||||||| Sbjct 397 TTTGACTCTGTCAACTAACGCGAACCTCTCATCGAGTCGGACATCAAGAGAGCGGTAGCC 338 Query 33799 TTTTTTAATATTTCATTCTCCATTTCAATGCGTTGTAGCT--TTTTCCTGAGCTCACGGA 33856 ||||||||||| || ||||| ||| | | |||| |||| |||||||| | Sbjct 337 TTTTTTAATATCTCTTTCTCTTCTTCGACCCTCCTGAGCTGCCTTTC--AAGCTCACGTA 280 Query 33857 TTTCAATTTGTTCCGGGGTAATGGGGGAGGCTTTTGGTGTTTTGCCCTGACGCTCATCAC 33916 | ||| |||||||| || || | | ||| || | | || | ||||| | | Sbjct 279 TCCGTTGTTGGTCCGGGGTCATCGGTGTGCCTTGAGGGGCTACACCTTCTCGCTCCGCTC 220 Query 33917 GCAGTTGTTTGACCCATCTTGT-CATTGTGGAAAGGCCAACATCCATAGCTTTGGCGGCA 33975 | || || ||||| ||||| |||||| || ||||| ||||||| | ||| || Sbjct 219 GAAGCTGGCGCACCCA-CTTGTCCATTGTTGATTTACCAACCCCCATAGCGTCGGCTGCT 161 Query 33976 TCTGCCACCGTGTATTTCTGGTCAACAACCAGTTGAGCGGATTCGCGTTTAAACTCTGCG 34035 ||| | | | ||| ||||| |||| ||| || | ||| || | || |||| | Sbjct 160 TCTCGAATTGAGCGACCCTGATCAACTACCAATTGGGCTGCTTCAAGTCTGAATTCTGGG 101 Query 34036 CTAAA---------ATTTCtttttttCATTGGAGCACCTGTGTTGTTCT-GAGGTGAGCA 34085 ||||| ||||| | |||||| || ||||||||||||| | ||| ||| || Sbjct 100 CTAAAGGTTGGTCTGGTTCTTCTCTTCATT-GATCACCTGTGTTGTTGTGGAGATGATCA 42 Query 34086 TATCACCTCTGTTCAGGTGGCCAAATTCAGTGTGCCACT 34124 ||||||||| ||||||||||||||||| | ||||||| Sbjct 41 TATCACCTCCTATCAGGTGGCCAAATTCACTATGCCACT 3 >seq90072 Length=608 Score = 118 bits (130), Expect = 3e-22 Identities = 315/476 (66%), Gaps = 4/476 (1%) Strand=Plus/Plus Query 32878 CTGAAGTGGTCAACAAAAACTGGCCACCGAGTTAG-AGTTTTTCCAGTATCGATTT-TCC 32935 ||| ||||||||| |||||||||||| | |||| |||| |||| || | ||| ||| Sbjct 124 CTGTAGTGGTCAAGTAAAACTGGCCACAGT-TTAGTAGTTAGTCCAATA-CAATTGCTCC 181 Query 32936 GATTCGTTTGGGGGTAACCCACCGTTATATTCGTGCGGTCTTAGTGCACTGTAATATCCA 32995 | | ||||| ||| |||| || | || ||| |||||| |||||||| ||| Sbjct 182 GCTGTATTTGGACTTAAACCACGATTGTGTTGGTGAGGTCTTGTCTGGCTGTAATAACCA 241 Query 32996 ACGATATAGTCCGTTATGGCGTGAGCTGCCTCGCTGAAGCTTACGTAACCCACCACCGGC 33055 || | ||| || || | || || || || ||| | |||||| | | ||| Sbjct 242 ACTAGATAATCTGTCACCGCATGCTTCGCTTCAACGAAATTCCGGTAACCAAGTGCTGGC 301 Query 33056 ATCCATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCTGTTATCCCAGCAGTTT 33115 | |||||| | || | ||||||||| || | |||||| || || ||||| || ||| Sbjct 302 ACCCATTCCGTTTTTAAACTCCTGAAAAATCTTTCCATAGGTGCATTGTCCCAACAATTT 361 Query 33116 CCGCGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAACTGCCGGAACTGCCTG 33175 || || || ||||| || ||| || ||||| ||||| | |||||| || || | Sbjct 362 CCTCGGCGACTCATGCTTTGTTCAATTTGGTAACGCCATAGCTGCTGCCGAAATTGTCGA 421 Query 33176 CTCGTATAATGACTGCCCTGATCGCTGTGGAACATCACCCCGCCGGGCTTACCACGGGTT 33235 || || ||||||||||| || || ||| || | || | || || || | | Sbjct 422 CTGGTGTAATGACTGCCTTGGTCAGAGTGAAAGAGTACGCTTTTCGGTCGGCCGCGCGAT 481 Query 33236 TCCCATGCCATTTCCAGCGCTTTCATGGTGAGCCTGCTGTCCGGCGAGAACGACATGGCC 33295 || | ||||| ||||| | ||| | | |||| || ||||| |||||||| ||| Sbjct 482 TCATAAGCCATGCTTAGCGCCTGACAGGTTAACGTGCTATCTGGCGATAACGACATCGCC 541 Query 33296 CAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCCCAGCG 33351 ||||| | || || | | || | || | ||| || || | || |||||||| Sbjct 542 CAGCCAATCGGCTTGCGGGAAAATAAATCTATAACGACAGCCAAATAGGCCCAGCG 597 >seq65442 Length=2413 Score = 91.5 bits (100), Expect = 4e-14 Identities = 154/221 (70%), Gaps = 13/221 (6%) Strand=Plus/Plus Query 21605 AACTTCGGTAGTGAACCTATCCTGTCCGCTTTGATCCTGCCATTTTCTTGTCCGCAATTT 21664 || ||| || ||| | ||||||| ||| |||| || |||||||| | || | | | Sbjct 113 AATTTCTGTTGTGTATTTATCCTGCCCGTTTTGGTCTTGCCATTTACGGGTTTGAACTGC 172 Query 21665 GCCTTCAAGATAAACCTCAGAGCCTTTTCGCAGATATTCGCT-GGCAATTTCTGCCAGTT 21723 ||| ||||||||||| | | |||||| || ||||| ||| ||||| || ||||| || Sbjct 173 GCCCTCAAGATAAACTTTCGCGCCTTTCTTCAAATATT-GCTCGGCAACTTTTGCCAATT 231 Query 21724 TCCCGCTCATT-------ACCACGCGGTGCCACTCCGTCTGCTCCTTTTGCTCTCCAGTT 21776 ||||||| || || |||||||| ||||| |||| || | || |||| Sbjct 232 ----GCTCATTGAAAATAACAACACGGTGCCATTCCGTGCGCTCTTTGCGTTCGCCAGAA 287 Query 21777 TGCTTATCACGCCATTGTTCTGACGTAGCAACTGTAAGGTT 21817 |||||||||||| ||| || || || || | |||||| Sbjct 288 GCCTTATCACGCCAAGATTCAGATGTTGCCACCGAAAGGTT 328 >seq76308 Length=1237 Score = 84.2 bits (92), Expect = 5e-12 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 33058 CCATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCTGTTATCCCAGCAGTTTCC 33117 |||||| |||||| ||| | || | || ||||| || ||| ||||| || || || Sbjct 1069 CCATTCAGTCTTCAAACTTCGAAACACCCGCTCCATAGGCGAGTTGTCCCAACAATTCCC 1010 Query 33118 GCGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAACTGCCGGAACTGCCTGCT 33177 | || ||||| || || || | |||||||||| | || ||||| |||||| Sbjct 1009 TCTGCGACTCATGCTTTGCTCCATGCGATATCGCCACAGTCTTTGACGGAATAACCTGCT 950 Query 33178 CGTATAATGACTGCCCTGATCGCTGTGGAACATCACCCCGCCGGGCTTACC 33228 | ||| || || |||||||||||||| ||||| || || | ||||| ||| Sbjct 949 GGCATACTGGCTTCCCTGATCGCTGTGAAACATGACTCCACTGGGCTGACC 899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124654215997120