Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq61985 141 6e-29 seq101358 122 5e-23 seq59475 114 8e-21 seq91556 111 1e-19 seq18708 111 1e-19 seq81249 96.9 2e-15 seq31766 89.7 3e-13 >seq61985 Length=3435 Score = 141 bits (156), Expect = 6e-29 Identities = 399/604 (66%), Gaps = 18/604 (3%) Strand=Plus/Plus Query 8935 CAACAAAATTACCTTGCCCAAATACTTCGTCGCATAATAATCCCAACTGTTTATCTTCGT 8994 |||||||||| ||| ||||| | |||||| || | | ||||||| |||| | Sbjct 371 CAACAAAATTCTCTTCTCCAAAAATTTCGTCCATTACCATTTTCAACTGTGCTACTTCAT 430 Query 8995 TATCGTCTATGGAGATGAATATTACTCCATCCTCTTTTAAAAGTTCACGTGCAATATAAA 9054 || |||| || || || || || | ||||| ||||||| ||||| |||||||||| Sbjct 431 TAGCGTCAATTGAAATAAAAATAGCACCATCATCTTTTAGAAGTTGTTTGGCAATATAAA 490 Query 9055 GACGAGGATAAATGAATGTCAGCCATGCACTATGAC---TGCTTGAACCCTTGGTGGTAA 9111 | | || || || || || | ||| ||| ||| ||||| || || ||| ||| Sbjct 491 GTCTCGGGTACATAAACGTTAACCAAGCAGAATGTGAGTTGCTTTTAC--TTTGTG-TAA 547 Query 9112 ATTCAAGTATGCGGTTAGCC---TCATCAAGCTCGATACCTGCCAGTTCAGAAAGCTGTT 9168 | || | || || || || || ||| | | ||||| | || || | || Sbjct 548 AATCTAAAATTCGTTTTGCTCGTTCTTCA---TTTACTCCTGCTAACTCTTGTAGTTCTT 604 Query 9169 CTGGTGTAAACTTGCGATCATCGTTATAGACGAATCCATCTTTACCCGTATTGTATGGTG 9228 || ||||| || | || || ||| ||||| ||||| |||| || |||||||||| Sbjct 605 CTATGGTAAATTTTCTGTCGTCTGCATATACGAAACCATCACTACCTGTGTTGTATGGTG 664 Query 9229 GGTCAATGTAAATCATATTCACCTTTTCAGCATAAGCATTAACCATATGCTTCAATACTT 9288 |||||||||| ||||| || | ||||| ||| ||||| | ||||| | |||| Sbjct 665 GGTCAATGTATATCATTTTTATTTTTTCGTAATAGGCATTTGATAAGTGCTTTAGCACTT 724 Query 9289 CGAGGTTATCCCCTTTGATTAACAGGTTTTGACTGTTCTTGTTCTCTTCTTGTTGGTTAT 9348 | | || || ||||| || | | ||||| | ||| || || ||||| | ||||||| Sbjct 725 CTAAATTGTCACCTTTTATGAGTAAGTTTTCAGAGTTTTTATTTTCTTCGTTTTGGTTAA 784 Query 9349 GTGTTTTATCTTCTGCCAACAACGTTTTCGGTGGTAGATTGGCCAACAAACGGGCATAAG 9408 |||| ||||||| || | || | | | |||| || ||||| ||||||| Sbjct 785 AAGTTTCATCTTCTTTTAATAGAGTAGTGGTTTCGTCTGTGGCTAATAAACGAGCATAAG 844 Query 9409 ATTTACCCAGCCAGTTTAAACTGTATGATTCTTTAGAGAGTTCAACCTCCGATGCTCTAA 9468 ||||||||| ||| | | | || ||||||||| | | || || || | | | Sbjct 845 ATTTACCCAACCAATCCATTCCATAACTTTCTTTAGAAAAATTAATTTC--ATTTTTTGA 902 Query 9469 TAAT--CTCAAGCAATTTTTCTTGAATGAAGG-CTCCGTTTTTATCAAAACACTGTGGGA 9525 | | | ||||||||| | | |||| |||||||||| |||||||| | ||||| Sbjct 903 AAGTTGTTTTTTCAATTTTTC-AAAGTCAAGGTCTCCGTTTTTGTCAAAACAGTTTGGGA 961 Query 9526 AATT 9529 | || Sbjct 962 AGTT 965 >seq101358 Length=430 Score = 122 bits (134), Expect = 5e-23 Identities = 170/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 72378 GTGGCATTGTCACAACTTAATCGATCGCTT-GAACAGCGTGCGGACAAACGACCGGTAAA 72436 |||||| | ||||| || || || | |||| || ||||| | || |||||||| || | Sbjct 1 GTGGCACTTTCACAGCTCAACCG-TGGCTTAGAGCAGCGGCCTGATAAACGACCTGTCAT 59 Query 72437 TTCAGATTTACGTGAATCAGGAGCAATTGAGCAGGACGCAGACCTGATTATGTTTCTGTA 72496 ||||| || ||||| || ||||||||||| || || || ||||| | ||| | || Sbjct 60 GAGTGATTTGCGCGAATCTGGCGCAATTGAGCAAGATGCCGATTTGATTTTATTTATCTA 119 Query 72497 TCGCGACGAAGTTTATCACCCGGATAGCGAAATGAAGGGCATTGCCGAGGTAATTATCGG 72556 ||| || || |||||| |||| ||||||||| || |||| || || | ||| |||| Sbjct 120 TCGAGATGAGGTTTATAACCCCGATAGCGAAGATAAAGGCACCGCAGAAATTATTGTCGG 179 Query 72557 AAAGCAACGAAATGGCCCAATTGGCACG-GTGAGATTGGCTTTTAACGGCCAA 72608 || ||||| || || |||||||| ||| || ||||| | |||| || ||| Sbjct 180 TAAACAACGTAACGGTCCAATTGG-ACGCGTTCGATTGACCTTTATTGGGCAA 231 >seq59475 Length=8474 Score = 114 bits (126), Expect = 8e-21 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 72387 TCACAACTTAATCGATCGCTTGAACAGCGTGCGGACAAACGACCGGTAAATTCAGATTTA 72446 ||||| || |||||| || || || || | ||||||| || || | || ||| | Sbjct 7381 TCACAGCTCAATCGAAGCCTAGAGCAACGGCCAAACAAACGGCCAGTGATGTCTGATCTT 7440 Query 72447 CGTGAATCAGGAGCAATTGAGCAGGACGCAGACCTGATTATGTTTCTGTATCGCGACGAA 72506 ||||| || || || |||||||| ||||| || | || |||||| | ||||| | ||| Sbjct 7441 CGTGAGTCTGGTGCGATTGAGCAAGACGCCGATATCATCATGTTTATTTATCGTCATGAA 7500 Query 72507 GTTTATCACCCGGATAGCGAAATGAAGGGCATTGCCGAGGTAATTATCGGAAAGCAACGA 72566 || || | ||||| | ||| || || |||| ||| |||||||| | |||||||| Sbjct 7501 GTCTACGAGCCGGACACCGATCAAAAAGGTATTGGCGAAATAATTATCAGTAAGCAACGT 7560 Query 72567 AATGGCCCAATTGGCACGGTGAGATTGGCTT 72597 ||||||||||| || ||||| || | |||| Sbjct 7561 AATGGCCCAATCGGGACGGTTCGACTCGCTT 7591 >seq91556 Length=578 Score = 111 bits (122), Expect = 1e-19 Identities = 190/270 (70%), Gaps = 17/270 (6%) Strand=Plus/Minus Query 5966 GGCATATACGATTTTGTGCTTTTACCGGCATTTTTCTGACTTTCAACAACGTAAGTC-TT 6024 |||||| | |||||| | |||||| | ||||| |||||| |||| || || || Sbjct 577 GGCATAAAAGATTTTTTATTTTTACTCCCTTTTTT---ACTTTCTACAA--TATGTAATT 523 Query 6025 TA----TTTCACGCTCATAATCATCTCTAAA--GTGTTCTTTTAACGCATCGCTTTTCAA 6078 || ||| || |||| | ||| |||| |||||||| | ||| ||||| || Sbjct 522 TAATGGTTTTAC---CATATTGCTCTTTAAAATGTGTTCTTGCACT--ATCACTTTTTAA 468 Query 6079 AAAGTTCACTGTTCCAGCTTTGATCGATAGAGTAGGAACAATAATGATAAACTTATTAAT 6138 ||| | | ||||| ||||| || || || || |||||||||| ||||| ||| || Sbjct 467 AAAATCTATGGTTCCTGCTTTAATTGAAAGTGTTGGAACAATAACAATAAATTTAAAAAG 408 Query 6139 GCCAAATGATTTGTTCAGATCAAAAATTGTTTTAGTGTAGGTATACGTTTTACCTGTACC 6198 || | ||| || || |||||||| ||||| ||||||||||| ||||| ||||| || Sbjct 407 ACCGTAATTTTTATTGAGTTCAAAAATGGTTTTGGTGTAGGTATATGTTTTTCCTGTTCC 348 Query 6199 TGTCTCCATAGAAACATCAATTACGTTGCT 6228 ||| ||||| || ||| || | ||| || Sbjct 347 TGTTTCCATCATAATATCTATGATGTTACT 318 >seq18708 Length=281 Score = 111 bits (122), Expect = 1e-19 Identities = 146/201 (73%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 71485 TTGATTTGATAACACTTGCTGAAGCACTTGAACAGAACGGTAAA---TTAGAACGCGCCG 71541 ||||||| ||||| | | ||||| | ||| |||| | || |||||| || | Sbjct 216 TTGATTTAATAACCTTATCAGAAGCGTTAGAA---AACGATCAAAAGTTAGAAGATGCTG 160 Query 71542 GTGGTTTTGCGTACCTTGCGGAGATGTCAAAGAACACGCCCAGCTCGGCAAATATTTGTG 71601 | ||||||| || || || || ||| || |||||||| || ||||||||||| | Sbjct 159 GCGGTTTTGTTTATCTCGCTGAAATGATGAAAAACACGCCAAGTGCGGCAAATATTACAG 100 Query 71602 CTTATGCGGATATCGTTCGTGAACGCGCGGTTGTTCGTGAAATGATTTCCGTCGCAAATG 71661 | ||||||||||| || |||||||| || || |||||||||||| || ||||||| Sbjct 99 CCTATGCGGATATTGTACGTGAACGTGCAGTAACACGTGAAATGATTAGTGTGGCAAATG 40 Query 71662 AAATAGCCGAAGCTGGATATG 71682 |||| || ||||| || |||| Sbjct 39 AAATTGCTGAAGCGGGTTATG 19 >seq81249 Length=935 Score = 96.9 bits (106), Expect = 2e-15 Identities = 119/163 (73%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 72421 ACAAACGACCGGTAAATTCAGATTTACGTGAATCAGGAGCAATTGAGCAGGACGCAGACC 72480 ||||||| || | ||||| ||||| |||||||| || || ||||||||||| || || Sbjct 549 ACAAACGGCCTATTAATTCTGATTTGCGTGAATCTGGTGCGATTGAGCAGGATGCCGATG 490 Query 72481 TGATTATGTTTCTGTATCGCGACGAAGTTTATCACCCGGATAGCGAAATGAAGGGCATTG 72540 | ||| | ||| | ||||| || ||||| || || || || | ||||| |||| Sbjct 489 TTATTGTCTTTATCTATCGAGATGAAGTGTACAACGAAGAAAGTGCTGATAAGGGAATTG 430 Query 72541 CCGAGGTAATTATCGGAAAGCAACGAAATGGCCCAATTGGCAC 72583 |||| |||| ||||| ||||| |||| || || || ||||| Sbjct 429 CCGAAATAATCATCGGTAAGCAGAGAAACGGTCCCATAGGCAC 387 >seq31766 Length=247 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 72165 AATATTTTTATTGATGACTCAAGCGCCCTGACGCCGACAGAGCTACGTTCCCGCGCTCGT 72224 || || | ||||||||| || | ||||||| || ||| | || || | || || Sbjct 234 AAAATGTATATTGATGATGCAGCAGGGTTGACGCCAACCGAGGTTCGCTCTAGAGCACGA 175 Query 72225 CGTGTTTATAAAGAAAATGGTGGTTTGAGCATGATTATGATCGACTACCTGCAACTTATG 72284 ||| || || || |||| || | ||||| ||||| || || ||||| | ||| Sbjct 174 CGTATTCATCGTGATCATGGGGGGATTTCGATGATCATGATTGATTATTTGCAATTAATG 115 Query 72285 CGCGTCCCCGAGCTGCAAGATAACCGAACGCTGGAAATTGCCGAGATTTCTCGCTCACTG 72344 || | || | | |||||| || || | |||||||| || || ||||||||||| Sbjct 114 CGTGCGCCACAATTTTCAGATAATCGTACTTTAGAAATTGCTGAAATCTCTCGCTCACTA 55 Query 72345 AAGGCGTTGGCGAAGGAATTACAAGTACCGGTGGTGGCATTGTCACA 72391 || ||||| || || ||||||||||| || || || || ||||| || Sbjct 54 AAAGCGTTAGCAAAAGAATTACAAGTGCCTGTTGTTGCTTTGTCTCA 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 302831809245792