Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq70280 127 2e-24 seq46670 86.0 7e-12 >seq70280 Length=1721 Score = 127 bits (140), Expect = 2e-24 Identities = 473/719 (66%), Gaps = 32/719 (4%) Strand=Plus/Plus Query 6703 TGAGGATTATAATCTAACAATTCAAAATCTTCAAATTTAAAATCACATAAAT-TATCAGA 6761 ||| | || || |||| ||||| |||||||||||||||||||| | ||| | | | Sbjct 107 TGATGTTTGTATTCTACCAATTTGAAATCTTCAAATTTAAAATCT--TCAATATCTTTTA 164 Query 6762 CtttttttttAATA-TTACAACAGGTGAAGGTTTTATTGATCGAGTTAATTGTTCTTTTA 6820 || ||| ||| ||| || |||| ||| | | |||| ||| |||||| Sbjct 165 TTTCCTTTGAAATCGTTAATTGTGGGAAAGGATTTGGATACCTCTTTAACTGT-CTTTTA 223 Query 6821 --TAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAATAAATTCACC 6878 | |||| | ||||| | || | |||||| ||||||| || ||||| |||||||| Sbjct 224 AGTGGCTTC-ACATGATTTTTGTATACATGAGCGTCTCCTAAAGTGTGAATGAATTCACC 282 Query 6879 TGGTTTCATATCAACAGCT-TGAGCAATTAAATATGTTAATAATGCATAAGAAGCTACAT 6937 | ||||| | || | |||||||| | | || | || |||| ||||| || Sbjct 283 TC-TTTCAAGGCCTCAAATCTGAGCAATCATGCAGGTGAGTAGACTATAACTAGCTATAT 341 Query 6938 TAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACAT-TGACAAGATAAAATA 6996 | || ||||| |||| || ||||| |||||||| ||| ||||| ||||| || Sbjct 342 TGAATGGTACTCCTAGACCAATATCACAACTCCTTTGATA-CATCTGACAGGATAATCTA 400 Query 6997 TTGTC--TAT-AGCATAAAATTGACACAATACATGACATGGAGGTAAAACAGCCTGATCT 7053 || | ||| | |||| || || || | | ||| || || |||| | | || | | Sbjct 401 TTTTTAGTATCAACATAGAACTGGCAGATGATATGGCAAGGTGGTAGAGCCATCTTCTTT 460 Query 7054 ATATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAAT 7113 | |||| |||||| ||| | | | ||| | || | ||||||| ||| | Sbjct 461 AAGTCAGCAACATTCCATGCATTAAGAATAATTCTTCGACTGGTTGGATTCTCTTTGAGG 520 Query 7114 TTTGTTATAATTATTTGTAATT-GATCTATACCCTGACCTTCATAATTAGTATGACAATT 7172 | | | ||||| ||| ||||| |||| | || || |||||||| | | ||| | | Sbjct 521 TCTTTAATAAT-ATTCTTAATTTGATCGACTCCTTGTCCTTCATAGTCATCATGCATAGT 579 Query 7173 TATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTC 7232 |||| | ||||||||| ||||||||||| || ||||| | || || | ||||||||| Sbjct 580 CTTATATTCAGCTCCAAAGTGTCTCCATTGGAAACCATATACTGGTCCAAGATCACCTTC 639 Query 7233 TTCACGATGATTAAATCCTAATCGATTTAAATTAGATT---TTGATCCATAAGCATCCCA 7289 ||| | | ||||||| || | | | || | ||| |||| || | | ||||||| Sbjct 640 TTCTCTTTCTGTAAATCC--ATTGTTATCAA-GAAATTCTCTTGAGCCGTTACCATCCCA 696 Query 7290 AATATGTACAGAtttttttGATAAAT-----TTAAAGAATTTGTAGATCCTTTAAGGAAC 7344 || | || ||| ||| | || | || |||||||| ||| |||||||| Sbjct 697 GATTTTAAC---TTTATTTCA-AACTCAGGGTTGTTGAATTTGTTTCCCCTCTAAGGAAC 752 Query 7345 CATAAAAGTTCTTCTACTATTCCACGCCAAAACATTCTTTTTGTAGTGAATAAAGGGAA 7403 ||||| || |||||||| | ||| ||| | | ||| ||||||| | |||||| Sbjct 753 CATAAGAGCTCTTCTACAACTCCCTTCCAGTATACGTCTTTAGTAGTGAGGAGAGGGAA 811 >seq46670 Length=218 Score = 86.0 bits (94), Expect = 7e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 30437 CGTAAAATTTGTGTAATAAAttttttttCCACATCTAATAGTTTACCAATTTTCCAATCC 30496 || ||||| | ||||||| | | |||||| || | | || ||| ||| ||||||| || Sbjct 6 CGCAAAATATTTGTAATATACTCTTTTTCAACCTTTGTTATTTTGCCATTTTTCCAGTCA 65 Query 30497 GTCACATCGTCGGCCAAACTAATTTCCTTTTCCGTCCAATGCATATTCTCATGTAAAGAT 30556 || ||||| || | | | |||||| | ||| |||| || || ||||| | Sbjct 66 GTAACATCTTCAGAAAGATCAATTTCATCTTCTATCCAGTGAGCTTTTTCATGCTTAACC 125 Query 30557 CTTAGTTCCACAGCCCATGGATAATGAAAAGGTTTATAAG 30596 |||| || ||||||||||||||| |||||||||||||| Sbjct 126 GTTAGGTCAACAGCCCATGGATAACAAAAAGGTTTATAAG 165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595058992243200