Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq108602 154 1e-32 seq19544 114 1e-20 seq44811 98.7 9e-16 seq97248 96.9 3e-15 >seq108602 Length=371 Score = 154 bits (170), Expect = 1e-32 Identities = 177/236 (75%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 94774 TTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATA 94833 ||| | ||||||||| | || | ||||| || | ||||||||| ||||| | |||||| Sbjct 114 TTAGAATCCTCCTCTAAGTCTGAGGACCAAATGGAGAGTAGATTCTTTTTGAATGTTATA 173 Query 94834 ATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGA 94891 ||| | |||| ||| | || || | |||||||| ||||||| | ||| || || Sbjct 174 ATC--TGATAGAGTTCTACCGTCTTCTAATTGTTTTCCAGCAAAGATAAGTCTCTGTTGG 231 Query 94892 TCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCG 94951 ||||| ||||| || ||||| || | ||| || | |||||| | ||| ||||||| Sbjct 232 TCTGGTGGAATTCCCTCTTTATCTTGAATCTTAGTCTTGACATTGTCGATGGTGTCAGAT 291 Query 94952 TGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || | ||||||||||||||||||||||| || |||||||||||||| Sbjct 292 TGTTCAACATCTAAGGTGATGGTTTTTCCAGTAAGAGTCTTAACAAAGATCTGCAT 347 >seq19544 Length=280 Score = 114 bits (126), Expect = 1e-20 Identities = 174/247 (70%), Gaps = 2/247 (1%) Strand=Plus/Plus Query 94763 TTTTTA--AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCT 94820 |||||| || ||| || ||||||||| | || | ||||| || | ||| || |||| Sbjct 30 TTTTTACGAAGATTTGCATTCCTCCTCTAAGTCTAAGTACCAAATGAAGAGTGGACTCCT 89 Query 94821 TTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTA 94880 | || | || ||||| | || | ||| || | || ||||| ||||||| | Sbjct 90 TCTGGATATTGTAATCAGATAAGGTTCTTCCATCTTCTAATTGCTTTCCTGCAAAGATCA 149 Query 94881 ATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGA 94940 ||||||| |||||||| || |||||||| || || | ||| || | ||| || | | Sbjct 150 ATCTTTGTTGATCTGGTGGGATACCTTCCTTATCTTGAATCTTAGTCTTTACATTATCAA 209 Query 94941 CAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGA 95000 ||| || | || |||||||||| || ||||| |||||||| | || || ||||||| Sbjct 210 TAGTATCGGATTGTTCGACGTCAAGGGTAATGGTCTTTCCAGTCAAGGTCTTTACAAAGA 269 Query 95001 TCTGCAT 95007 ||||||| Sbjct 270 TCTGCAT 276 >seq44811 Length=222 Score = 98.7 bits (108), Expect = 9e-16 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 || ||||||||| | || | |||||||| | |||||||||||| || | ||| || || Sbjct 43 CATTCCTCCTCTAAGTCTGAGGACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTC 102 Query 94837 GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 | | ||| | || |||| || ||||| ||||||| | |||||| |||||||| Sbjct 103 GGAGAGAGTTCTACCGTCTTCCAATTGCTTTCCAGCAAAGATAAGTCTTTGTTGATCTGG 162 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933 ||||| ||||||||||| | ||| || | ||| ||| Sbjct 163 TGGAATTCCTTCTTTGTCCTGAATCTTAGTCTTAACG 199 >seq97248 Length=461 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 || ||||||||| | || | ||||| || | ||| || || || || | ||| ||||| Sbjct 413 CATTCCTCCTCTGAGTCTAAGGACCAAATGAAGAGTGGACTCTTTCTGAATGTTGTAATC 354 Query 94837 -GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTG 94895 | | || | || | || || | || ||||| | ||||| ||||| || ||||||| Sbjct 353 AGATAATGTTCTTCCA-TCTTCTAATTGCTTTCCAGCGAAGATCAATCTCTGTTGATCTG 295 Query 94896 GAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGT 94955 | || || ||||||||||| | ||| || | ||||||| | | | ||| || | || | Sbjct 294 GTGGGATGCCTTCTTTGTCTTGAATCTTAGTCTTGACGTTGTCAATAGTATCTGATTGCT 235 Query 94956 CGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || | || || || || ||||| | ||| || || ||||| ||||| Sbjct 234 CAACATCTAAGGTAATTGTCTTACCAGTTAAAGTCTTTACGAAGATTTGCAT 183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447679551486720