Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_006552.1 Length=65195 Score E Sequences producing significant alignments: (Bits) Value seq39415 91.5 6e-14 seq59983 89.7 2e-13 >seq39415 Length=231 Score = 91.5 bits (100), Expect = 6e-14 Identities = 101/133 (76%), Gaps = 4/133 (3%) Strand=Plus/Minus Query 11264 CCTTCGATGTAGACCTGGGAGCCCTTTCGCAGGTATTGCGCTGCGATTTCGGCCAGCCGG 11323 ||||| || || |||| || || || | | ||||| || |||||||| || || ||| Sbjct 132 CCTTCAATATAAACCTTTGAACCTTTATGTAAATATTGAGCGGCGATTTCAGCAAGACGG 73 Query 11324 CCA--AAGAGCACGACCCGGTGCCACTCGGTGCGCTCCTGCTGCTGGCCGGTCTGCTTGT 11381 ||| || || | || || |||||||| || |||||||||||||| ||||| || || | Sbjct 72 CCATTAAAAGTA--ACTCGATGCCACTCAGTTCGCTCCTGCTGCTGACCGGTTTGTTTAT 15 Query 11382 CTTTCCAGCTTTC 11394 |||||||||| || Sbjct 14 CTTTCCAGCTCTC 2 >seq59983 Length=5794 Score = 89.7 bits (98), Expect = 2e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 11238 CCTGCCACTTGCGGGTGCGTAGGCTGCCTTCGATGTAGACCTGGGAGCCCTTTCGCAGGT 11297 ||||||| || ||||| ||| |||||||||||||||||| ||||||||| |||| Sbjct 298 CCTGCCATTTTCGGGTTTGTAACTTGCCTTCGATGTAGACCTTTGAGCCCTTTTTAAGGT 239 Query 11298 ATTGCGCTGCGATTTCGGCCAGCCGGCCAAAGAGCACGACCCGGTGCCACTCGGTGCGCT 11357 | | | || | |||| | || || || | || | |||||||||||||||| Sbjct 238 ACTCGCCGGCCACTTCGCCAAGGCGATTGAACAAGGTGATTCTATGCCACTCGGTGCGCT 179 Query 11358 CCTGCTGCTGGCCGGTCTGCTTGTCTTTCCAGCTTTC 11394 | || ||| |||||| | |||||||||||| |||| Sbjct 178 CTTGGCGCTCGCCGGTGTTCTTGTCTTTCCAATTTTC 142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 208221835599232