Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq69284 80.6 4e-11 >seq69284 Length=1844 Score = 80.6 bits (88), Expect = 4e-11 Identities = 169/251 (67%), Gaps = 6/251 (2%) Strand=Plus/Minus Query 16452 CTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTG 16511 |||| |||| | ||| |||| ||||||||||||| ||| | | ||||| | | | Sbjct 548 CTCTCAGAGAGACTATCTTAGGAGTCACCAAGCCAGCCATCAGAAGATTGGCTAGAAGAG 489 Query 16512 GTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCT 16571 ||||||| || | |||| | ||||||||||||| | | | ||| | ||| | Sbjct 488 GTGGAGTTAAAAGAATCTCCTCTCTTGTCTATGAAGAGACTAGAGCTGTCCTCAAGGGAT 429 Query 16572 TCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTG 16631 ||||| ||| ||| ||| || | | ||| || |||||||| || | ||||||| Sbjct 428 TCCTCGAGAGCGTCATCAGAGACTCAGTTACCTACACTGAGCACGCCAAGAGAAAGACTG 369 Query 16632 TCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGA---TTTATGGTT 16688 ||||| || | || | ||||| || | || | |||| | |||| ||||||| | Sbjct 368 TCACCGCCCTCGACGTTGTCTACGCTCTTAAGAGACAAG---GAAAGACCCTTTATGGAT 312 Query 16689 TTGGAAGTTAA 16699 | || ||||| Sbjct 311 TCGGTGGTTAA 301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78975401562336