Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq59582 194 3e-44 seq59179 176 7e-39 seq12128 113 7e-20 >seq59582 Length=7566 Score = 194 bits (214), Expect = 3e-44 Identities = 560/859 (65%), Gaps = 31/859 (4%) Strand=Plus/Minus Query 193424 AATAATGAAAAAAGCATTAATAACAGGCATAACTGGGCAGGATGGATCTTATCTTGCCGA 193483 |||||||||||| || ||||| ||||| || || || || ||||| |||||||||||||| Sbjct 1509 AATAATGAAAAAGGCCTTAATTACAGGTATCACCGGCCAAGATGGGTCTTATCTTGCCGA 1450 Query 193484 GTTTCTTTTGTCTAAGGGATATGAAGTTCATGGTATTGTAAGGAGAAGTTCCCTAATCAA 193543 |||||| || || || ||||| |||||||||||| | | || ||| | |||| Sbjct 1449 GTTTCTATTAGAAAAAGGTTATGAGGTTCATGGTATTAAACGACGAGCTTCGTCATTCAA 1390 Query 193544 TACTCATAGAATTGATCA----TATCTA-----------------TGAGAAGATCACTCT 193582 ||| | ||||||||||| |||| | | | ||| | | | Sbjct 1389 TACAGAAAGAATTGATCACTTATATCAAGATCCTCATGTCCGCAATCAAAAGTTATTTTT 1330 Query 193583 TCATTATGGAGATCTAACTGATCCTGTAAATGTTATGGGTGTCATTAGGGCAGTTGAACC 193642 ||||| || || | | ||| | || | | | | ||| | ||| || Sbjct 1329 GCATTACGGTGACTTGAGCGATACCTCGAACCTAACCCGGATAATTCAAGAGGTTCGTCC 1270 Query 193643 TGCTGAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGAGATGCCAGA 193702 || || | ||||| |||| ||| ||||||||||| || || |||||| ||||||| Sbjct 1269 TGACGAAGTGTATAACCTTGCTGCGCAAAGTCATGTGGCGGTGTCATTTGAGGTGCCAGA 1210 Query 193703 GTATACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGTTCGTATGTT 193762 || || || |||| ||||| || ||||| || | | |||||||| |||| | | Sbjct 1209 ATACACCGCTGATGTAGATGCATTGGGAACCCTGCGTCTGCTTGAAGCGATTCGGTTTCT 1150 Query 193763 GGGAATGGAGAAAGATGTTCGCAT-CTATCAGGCATCTACCAGCGAACTGTATGGTGGTG 193821 ||| | || ||||| || |||||| || | ||| ||| |||| ||| | Sbjct 1149 GGGGCTAGA-AAAGACAACTAAATTCTATCAAGCTGCGACCTCTGAATTGTACGGTTTGG 1091 Query 193822 TTCTAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATGGTGTAG 193881 | | || || || | | |||||| || |||||| | || ||||| || |||| || | Sbjct 1090 TGCAAGAGACGCCGCAAAGAGAAACTACGCCATTTTACCCTCGCTCGCCATATGCGGTTG 1031 Query 193882 CAAAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTCCACGCTA 193941 | || | |||| || ||||| | |||||||||||||| || || | || Sbjct 1030 CTAAACTATATGCCTACTGGATAACGGTAAATTATCGTGAGTCCTACGGCATGTTTGCCT 971 Query 193942 GTTCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTA 194001 || ||||||| | || ||||| || || ||| | | || || || |||||||| || | Sbjct 970 GTAATGGTATTTTATTTAATCATGAGTCGCCACGTCGGGGCGAAACGTTTGTAACCCGAA 911 Query 194002 AGATTACACAAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATTCTTTATCTTGGTA 194061 | ||||| | || || | || || | || ||| | || | |||||||| | Sbjct 910 AAATTACCCGAGCCTTGGCCAATATTGCACACGGTTTAGAACCTGTTGTGTATCTTGGGA 851 Query 194062 ATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTT--GAAGCGATGTGGTT 194119 || | | || | | |||||||| || || || ||||| ||| | || | ||| | Sbjct 850 ATATGGACGCACTGCGAGATTGGGGGCATGCCAAAGATTACGTTCGCATGCAA--TGGCT 793 Query 194120 AATGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGAACAGTATTCTGT 194179 |||||||| || || || | ||||||||||| |||||||| || | || || || Sbjct 792 GATGTTGCAGCAAGAGCAAGCTGATGATTATGTCATTGCTACTGGCAACCAAATATCCGT 733 Query 194180 TAGAGACTTTGT--GAATGAAGCAGCACCCTATTTTGGTTTTAAACTAGAATGGATGGGT 194237 ||||| ||||| | || || || | | | ||| | ||||||||| | || Sbjct 732 CAGAGAGTTTGTCCGCTTG--GCTGCTGCTGAAATCGGTGTCGAACTAGAATTTAACGGC 675 Query 194238 GAAGGTGAAGACGAGATTG 194256 ||||||| |||||| ||| Sbjct 674 GAAGGTGTTGACGAGGTTG 656 >seq59179 Length=18447 Score = 176 bits (194), Expect = 7e-39 Identities = 382/564 (68%), Gaps = 12/564 (2%) Strand=Plus/Minus Query 193646 TGAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGAGATGCCAGAGTA 193705 |||| | |||||| | | ||| ||||||||||| ||||| || || ||| || || Sbjct 16937 TGAGGTTTATAATTTGGCTGCACAAAGTCATGTGGCGGTTTCATTCGAAGAGCCTGAATA 16878 Query 193706 TACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGTTCGTATGTTGGG 193765 ||| |||| ||| ||| | || || | | | || ||||| | || || | || Sbjct 16877 TACGGCTAACTCTGACGCTCTTGGCACGTTGCGTTTGCTCGAAGCTATCCGAATTCTAGG 16818 Query 193766 AAT-GGAGAAAGATGTTCGCA--TCTATCAGGCATCTACCAGCGAACTGTATGG--TGGT 193820 | | || |||| || | | ||||||| || || ||| ||| ||||||| |||| Sbjct 16817 ACTTGGGGAAACAT---CAAAATTCTATCAAGCCTCAACCTCTGAATTGTATGGGTTGGT 16761 Query 193821 GTTCTAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATGGTGTA 193880 | | || ||||| | | ||||| ||||||||| |||| ||| ||| |||| || Sbjct 16760 G--CAAGAAACTCCTCAAAAGGAAACAACACCATTTTATCCGCGCAGTCCCTATGCGGTT 16703 Query 193881 GCAAAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTCCACGCT 193940 ||||| |||||| || ||||| | ||||| || || | ||||| || |||| Sbjct 16702 GCAAAAATGTATGCCTACTGGATTACAGTTAATTACCGCGAAGCCTATGGGTTGTACGCG 16643 Query 193941 AGTTCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGT 194000 || |||||| || ||||| || ||||| || | || ||||||||||| ||| | Sbjct 16642 TGTAATGGTATCCTGTTCAACCATGAATCGCCTCTGCGCGGCGAGACATTTGTGACTAGA 16583 Query 194001 AAGATTACACAAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATTCTTTA-TCTTGG 194059 || || ||| || | | |||| |||| ||| || | | || | ||| || Sbjct 16582 AAAATCACAAGAGCGCTCGCACGGATCAAGCTTGGTACACA-AAAACTGTTAAGTCTCGG 16524 Query 194060 TAATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGGTT 194119 ||| | || || | |||||||| |||||| ||||| || || | |||||| Sbjct 16523 GAATTTATCGGCCAAACGAGATTGGGGGCACGCACGCGATTACGTAGAGATGCAGTGGTT 16464 Query 194120 AATGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGAACAGTATTCTGT 194179 |||| | |||||||||| || || |||| ||| ||||||||||||| |||||||| || Sbjct 16463 AATGCTTCAACAGGATGTCCCTGAAGATTTTGTTATTGCTACAGGTGTGCAGTATTCCGT 16404 Query 194180 TAGAGACTTTGTGAATGAAGCAGC 194203 | | || ||||| |||| ||| || Sbjct 16403 TCGTGATTTTGTTAATGCAGCGGC 16380 >seq12128 Length=306 Score = 113 bits (124), Expect = 7e-20 Identities = 169/238 (71%), Gaps = 4/238 (2%) Strand=Plus/Plus Query 193840 CAGAAACCACACCATTTCATCCACGCTCTCCTTATGGTGTAGCAAAGTTGTATGGTTATT 193899 ||||||| || || ||| | || || || || |||| ||| ||||| |||||| ||||| Sbjct 64 CAGAAACAACGCCTTTTTACCCTCGGTCACCCTATGCTGTGGCAAAAATGTATGCTTATT 123 Query 193900 GGATCATCAAGAATTATCGTGAGTCATATGGATTCCACGCTAGTTCTGGTATTCTCTTCA 193959 |||| | ||| ||||| ||| | |||||| | |||| || |||||| | || | Sbjct 124 GGATTGTAGTGAACTATCGAGAGGCTTATGGAATTTACGCCTGTAACGGTATTTTGTTTA 183 Query 193960 ATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGATTACACAAGGTTTAT 194019 | || || ||||| | ||||||| ||||||||||| || || || || | | | | Sbjct 184 ACCATGAGTCTCCGCGTCGAGGTGAAACATTTGTAACCCGGAAAATCACCCGTGCTCTGG 243 Query 194020 CTAAGATCTCTGTTGGATTACAGAAGATT--CTTTATCTTGGTAATCTTAATGCTAAG 194075 | || ||| | | ||| | | |||||| || || ||||||||| || |||||||| Sbjct 244 CCAATATCGGTATGGGAATTC--AAGATTGCCTCTACCTTGGTAATATTGATGCTAAG 299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 806453371685120