Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq59922 242 4e-59 >seq59922 Length=6033 Score = 242 bits (268), Expect = 4e-59 Identities = 604/903 (67%), Gaps = 36/903 (4%) Strand=Plus/Minus Query 21184 TTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGA 21243 |||||| || |||| |||||| ||||| || || || || || |||| | ||| || Sbjct 1148 TTTTTGGTATTCACCAACTCTCTTTTCAAAGAAGTTCGTTTTCCCTTGAATTGAAATCAT 1089 Query 21244 TTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAA 21303 |||||| ||||||||||| ||| | || |||| ||| | || | ||| | || Sbjct 1088 TTCCATGAAATCAAATGGGTTTGTCGCGTTGAATACTTTTTCGTTTCCTAATTCCAACAA 1029 Query 21304 TAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAA 21363 ||||||||| || ||||| || || ||||| |||| || |||| ||||| ||||| || Sbjct 1028 TAATCTATCAGCAACAAACTCAATGTATTGCGACATCAAATCACTGTTCATTCCGATTAA 969 Query 21364 TTTTACAGGAAGAGCTTTTGTCAAAAA-AGATT-TTTCT--ATAGAGACGGCTTCAACAA 21419 || || ||||| |||| ||| || | ||| ||||| || || || |||| | Sbjct 968 CTTAACGGGAAGTGCTT----CAAGAATAAATTCTTTCTCAATTTCAACTGCGTCAAGGA 913 Query 21420 TTATATTTATTATCCTAGATGTACTAGGG--GGATA-CAATAATT--GTT--TAAACATC 21472 | || ||| | | | | | || || | || ||| || ||| | | | Sbjct 912 TAAT-TTTCTGAACTG---TTTCCTTTGGAAGTTTATCAACGATGTGGTTGGTGTATAAT 857 Query 21473 AAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTT 21532 |||||||| |||||||| ||||| ||||| || || ||||| || ||||| || | Sbjct 856 AAACATGCGAAATCACAGTGCAATCCTTCGTCTCTTGAGATTAACTCGTTAGAGAAAGAA 797 Query 21533 AAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAG 21592 | || ||||| | |||||| || || ||||| | ||||| || | ||||| ||| Sbjct 796 AGCCCTGGCATCAGTCCTCTTTTCTTCAACCAGTAAATTGAACAGAAAGAACCTGAGAAG 737 Query 21593 AAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCC 21652 ||||| || || || || ||||||||||| | || ||| | ||| || ||| ||| Sbjct 736 AAAATTCCTTCCACTGCTGCAAATGCAACAAGTCTTTCTGCAAATG---ATCCTTCATCA 680 Query 21653 AATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCT 21712 | |||| ||||| | ||| ||| | |||| ||| || ||||| |||||||| Sbjct 679 A---TCCAACGCAAAGCCCAATCTGCTTTTACCTTAACACATTCCATTGTGTCAATAGCA 623 Query 21713 TTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATAC 21772 || || | || | ||| || | || | ||| |||| Sbjct 622 TTAAACAAATATTCTTTGTCCTTCGTGTCTTTAATGTAAGTATCTATTAAAAGCGAATAC 563 Query 21773 ATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAA 21832 ||||||| || || ||||| | |||| || || ||||| ||| || ||||||| | | Sbjct 562 GTTTCAGAGTGAATGTTTTCAACTGCTACTTGGAACCCGTAGAAAAATTTTGCCTCAGTA 503 Query 21833 CATTGAACCTCGGA--ATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGG 21890 | ||||| || || | ||| || || | |||||||||||||| |||||||| | Sbjct 502 TACTGAACTTCTGACAAGAAATTCTCTG--CTAAGTTTTCATTTACAATTCCATCTGATG 445 Query 21891 CGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAA--TT--TT 21946 | || ||||| ||||||| || ||| | ||||| ||||| ||||| ||| | || | Sbjct 444 CCGCGAAAAAAGCCAATACATGTTTAACAAAATGACGTTCATTATC-GTTCAGCTTCGTA 386 Query 21947 TTCCAATCTAATAAATC-TTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAAT 22005 | |||||| | ||| || |||| | ||| | ||||| | |||||| || ||||| Sbjct 385 TCCCAATCAATTAAGTCGGCTTGA-AGATCAATCTCTTCGGCTGTCCAGAAACTAGCTTC 327 Query 22006 AGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAATATTACAAACCTGTT 22065 |||||||| || | | ||| || |||| | | |||||||||| ||||| ||||| Sbjct 326 GGCCTTTTTGTAGAAAGCCCAAATGTCATCGTGTTGAATTGGAAATAGAACAAATCTGTT 267 Query 22066 ATT 22068 || Sbjct 266 GTT 264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531175074548480