Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_007022.1 Length=172963 Score E Sequences producing significant alignments: (Bits) Value seq12675 109 6e-19 seq60406 105 7e-18 seq95335 104 3e-17 seq13005 102 9e-17 seq106981 100 3e-16 seq32736 100 3e-16 seq83193 95.1 1e-14 seq83930 91.5 2e-13 seq64863 86.0 7e-12 >seq12675 Length=304 Score = 109 bits (120), Expect = 6e-19 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 6467 AGAGCTTCACCGAAGCAAATAGCCTTTGCCGCGATAACATGCATTAACGGACCACCCTGA 6526 ||||| || || || || |||||||| || || |||||||| || || || |||||| Sbjct 128 AGAGCCTCGCCAAATGCAACGGCCTTTGCGGCAATTACATGCATCAAAGGGCCGCCCTGA 187 Query 6527 ATACCCGGGAAGATAGCAGAATTTACTTTCTTGGCGATATCAGCATCGTTAGTAAGAATG 6586 || || || ||||| || || |||||||| || |||||| | ||||||| || || || Sbjct 188 ATGCCTGGAAAGATTGCGGAGTTTACTTTTTTCGCGATAGCCTCATCGTTTGTGAGGATC 247 Query 6587 AGACCACCACGAGGGCCGCGCAAAGTTTTATGAGTTGT 6624 | || || ||||||||||||| ||||| || || || Sbjct 248 ATGCCGCCGCGAGGGCCGCGCAGGGTTTTGTGCGTCGT 285 >seq60406 Length=4803 Score = 105 bits (116), Expect = 7e-18 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6470 GCTTCACCGAAGCAAATAGCCTTTGCCGCGATAACATGCATTAACGGACCACCCTGAATA 6529 ||||| || || || ||| || | |||||||||||||| || ||||| ||||||||| Sbjct 3834 GCTTCGCCAAAAGCAACAGCTTTACCAGCGATAACATGCATCAAAGGACCGCCCTGAATA 3775 Query 6530 CCCGGGAAGATAGCAGAATTTACTTTCTTGGCGATATCAGCATCGTTAGTAAGAATGAGA 6589 || || || | ||| ||||| | |||||| ||||| | |||| || || | | || Sbjct 3774 CCTGGAAATACAGCCGAATTGATTTTCTTTGCGATCGCCTCATCATTGGTCAACACAAGG 3715 Query 6590 CCACCACGAGGGCCGCGCAAAGTTTTATGAGTTGTAGAAGT 6630 || || || || |||||||| ||||| || ||||| ||||| Sbjct 3714 CCGCCGCGTGGCCCGCGCAAGGTTTTGTGCGTTGTTGAAGT 3674 Score = 91.5 bits (100), Expect = 2e-13 Identities = 176/257 (68%), Gaps = 2/257 (1%) Strand=Plus/Minus Query 6926 CCATGTGTTAAATGACCACCGCAATCCAAAGACATCGCCAATACTGAATCGCCTGGACTC 6985 |||||||| | |||||||| ||| | ||| ||| | || ||||||||| || Sbjct 3390 CCATGTGTGAGGTGACCACCAGCATCAAGGCTCATGCCCAGCAATGTATCGCCTGG-CTT 3332 Query 6986 AGCAA-CGCATGGTAAACAGCTTGGTTTGCCTGTGAACCGGAATGGGGTTGAACGTTTGC 7044 |||| ||| | |||| |||||||||||||| || || | || ||||| || || Sbjct 3331 GGCAAGCGCCATGAAAACGGCTTGGTTTGCCTGACTGCCAGAGTTTGGCTGAACATTGGC 3272 Query 7045 GAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATCTCATCGGC 7104 || | ||| | ||| || || | | || ||||| || |||||||| |||| | Sbjct 3271 AAAGTCGCATCCAAAAAGCTCAAGAACGCGTTCAATGGCAAGGTTCTCAGCAATATCGAC 3212 Query 7105 TTTTACACAACCGCCGTAATACCGTTTGCCTGGATATCCCTCAGCATACTTGTTGGTAAA 7164 | | |||||| || ||||| || || | ||| || || ||||| |||||||| | Sbjct 3211 ATATTGACAACCACCATAATAGCGACGACCAGAATAGCCTTCCGCATATTTGTTGGTCAT 3152 Query 7165 AATAGAACCTTGCGCTT 7181 || || |||||||||| Sbjct 3151 GATTGAGCCTTGCGCTT 3135 >seq95335 Length=508 Score = 104 bits (114), Expect = 3e-17 Identities = 163/228 (71%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 6938 TGACCACCGCAATCCAAAGACATCGCCAATACTGAATCGCCTGGACTCAGCAAC-GCATG 6996 |||||||| ||||||| ||| ||||||||| ||||||||| | | || || || Sbjct 346 TGACCACCTGCATCCAAACTCATACCCAATACTGTATCGCCTGG-CAAACAAAGTGCCTG 288 Query 6997 GTAAACAGCTTGGTTTGCCTGTGAACCGGAATGGGGTTGAACGTTTGCGAAAT-TGCAAC 7055 ||||| || ||| ||||| ||||| ||||| || || || || || || |||| | Sbjct 287 ATAAACCGCGCTGTTAGCCTGGGAACCAGAATGCGGCTGCACATTGGCAAACCCTGCACC 228 Query 7056 TAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATCTCATCGGCTTTTACACAAC 7115 |||||| | | || | |||||||| ||||| | || ||| ||| | |||||| Sbjct 227 -AAACAGCTTTGTAACGCGCTCAATCGCCAGCTCTTCCGTCTGATCAACAAACTCACAAC 169 Query 7116 CGCCGTAATACCGTTTGCCTGGATATCCCTCAGCATACTTGTTGGTAA 7163 | ||||| || || || || || |||||||||||||| ||||||| Sbjct 168 CACCGTAGTAACGCTTCTTGGGGTAACCCTCAGCATACTTATTGGTAA 121 >seq13005 Length=299 Score = 102 bits (112), Expect = 9e-17 Identities = 186/266 (70%), Gaps = 6/266 (2%) Strand=Plus/Minus Query 6926 CCATGTGTTAAATGACCACCGCAATCCAAAGA-CATCGCCAATACTGAATCGCCTGGACT 6984 ||||| |||||||| ||||| | |||| | ||| ||| | | || || || | Sbjct 291 CCATGCGTTAAATGCCCACCATGA-CCAAGGTTCATACCCATAATGGTGTCACCAGGTTT 233 Query 6985 CAGCAACGCATGGTAAACAGCTTGGTTTGCCTGTGAACCGGAATGGGGTTGAACGTTTGC 7044 || || |||| |||||||||||||||||| ||||| || || || ||||| ||||| || Sbjct 232 CAACATCGCAAAGTAAACAGCTTGGTTTGCTTGTGAGCCAGAGTGTGGTTGCACGTTGGC 173 Query 7045 GAAATT--GCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATCTCATCG 7102 | ||| || || | |||| |||| ||| ||||| |||| | || | | || Sbjct 172 -ATATTCAGC-ACCATACAGCGCTTTTAAACGGTCAATCGCCAATTGTTCTACTTGGTCA 115 Query 7103 GCTTTTACACAACCGCCGTAATACCGTTTGCCTGGATATCCCTCAGCATACTTGTTGGTA 7162 | | | |||| || || ||| | ||||| |||||||| || || ||||| || ||||| Sbjct 114 ACATATTCACATCCACCATAAAAGCGTTTACCTGGATAACCTTCTGCATATTTATTGGTT 55 Query 7163 AAAATAGAACCTTGCGCTTTCATAAC 7188 || || ||||| |||| ||| || Sbjct 54 AACTGCGAGCCTTGTGCTTCCATCAC 29 >seq106981 Length=382 Score = 100 bits (110), Expect = 3e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 6483 AAATAGCCTTTGCCGCGATAACATGCATTAACGGACCACCCTGAATACCCGGGAAGATAG 6542 ||| |||||| ||||| || ||||| || || ||||||||| ||| ||||| | | Sbjct 147 AAACAGCCTTCGCCGCAATCACATGACACAAAGGCCCACCCTGACCACCAGGGAATACTG 88 Query 6543 CAGAATTTACTTTCTTGGCGATATCAGCATCGTTAGTAAGAATGAGACCACCACGAGGGC 6602 | ||||| | |||||| |||| || || ||||| ||||| | ||||||||||||| Sbjct 87 CTGAATTAATTTTCTTTGCGAGCTCTTCACTATTAGTGAGAATAATGCCACCACGAGGGC 28 Query 6603 CGCGCAAAGTTTTATGAGTTGTAGA 6627 | |||| |||||| || || ||||| Sbjct 27 CACGCAGAGTTTTGTGGGTAGTAGA 3 >seq32736 Length=245 Score = 100 bits (110), Expect = 3e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 6467 AGAGCTTCACCGAAGCAAATAGCCTTTGCCGCGATAACATGCATTAACGGACCACCCTGA 6526 |||||||| ||||| | ||| || | || || |||||||| || ||||| ||||| Sbjct 179 AGAGCTTCGCCGAAAGCGACAGCTTTACCGGCAATGACATGCATCAATGGACCGCCCTGC 120 Query 6527 ATACCCGGGAAGATAGCAGAATTTACTTTCTTGGCGATATCAGCATCGTTAGTAAGAATG 6586 | || || |||| |||||||| | ||||||||| || | |||| || || || | Sbjct 119 AATCCGGGAAAGACCGCAGAATTGATTTTCTTGGCAATGGCCTCATCATTGGTCAGCACC 60 Query 6587 AGACCACCACGAGGGCCGCGCAAAGTTTTATGAGTTGTAGAAGTAACAAC 6636 | |||||||| || ||||||| ||||||||||| || || || |||| Sbjct 59 AATCCACCACGGGGACCGCGCAGGGTTTTATGAGTGGTGGATGTTGCAAC 10 >seq83193 Length=848 Score = 95.1 bits (104), Expect = 1e-14 Identities = 155/221 (70%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 7001 ACAGCTTGGTTTGCCTGTGAACCGGAATGGGGTTGAACGTTTGCGAAATTGCAACTAAAC 7060 || || ||||| || | || ||| |||||||||||||| || || | | ||| | ||| Sbjct 220 ACCGCCTGGTTGGCATTTGCACCCGAATGGGGTTGAACATTGGCATATTCGCAGTTGAAC 161 Query 7061 AGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATCTCA-TCGGCTTTTACACAACCGCC 7119 | | || |||| |||||||| |||| | | ||| | | | | |||||||| Sbjct 160 AACTGGCAGGCCCGCTTGATTGCCAG-TTCTTCAGCAATGTCGACATATTCGCAACCGCC 102 Query 7120 GTAATACCGTTTGCCTGGATATCCCTCAGCATACTTGTTGGTAAAAATAGAACCTTGCGC 7179 ||||| || |||| ||||| ||||| ||||| |||||||| | | ||||||||||| Sbjct 101 ATAATATCGCCTGCCCGGATAACCCTCGGCATATTTGTTGGTCAGCACTGAACCTTGCGC 42 Query 7180 TTTCATAACATCATCGGACACATAGTTTTCGGATGCAATCA 7220 || || || || |||||| || || || ||||||| Sbjct 41 TTCCAGCACGGCACGCGACACAATATTCTCCGAGGCAATCA 1 Score = 86.0 bits (94), Expect = 7e-12 Identities = 156/228 (68%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 6488 GCCTTTGCCGCGATAACATGCATTAACGGACCACCCTGAATACCCGGGAAGATAGCAGAA 6547 ||||| || ||||| |||||||| | ||||||||| || | || ||||| | || ||| Sbjct 721 GCCTTGGCTGCGATGACATGCATCAGCGGACCACCTTGCAGGCCGGGGAAAACGGCGGAA 662 Query 6548 TTTACTTTCTTGGCGATATCAGCATCGTTAGTAAGAATGAGACCACCACGAGGGCCGCGC 6607 || | ||| || | | | || ||||| | || || | |||||||| || |||||| Sbjct 661 TTGAATTTTTTACCCAAGGCCGCGTCGTTGGACAGGATCATGCCACCACGCGGACCGCGC 602 Query 6608 AAAGTTTTATGAGTTGTAGAAGTAACAACGTCAGCACCCCATTTGAGTGGATTAGCATGA 6667 | ||||||||||| || | ||| | |||| ||| | | || || || | ||| Sbjct 601 AGGGTTTTATGAGTCGTGGTAGTGGCCACGTGCGCATGC---TCCAGCGGGTTGGGATGC 545 Query 6668 AGTTTTGATGCGACGAATCCAGCAAAGTGGGCCATATCGACCATCAAC 6715 | | || || | || ||||| || ||||| |||||||| ||| Sbjct 544 ACTCCGCCGGCAACCAGCCCGGCAAAATGAGCCATGTCGACCATGAAC 497 >seq83930 Length=816 Score = 91.5 bits (100), Expect = 2e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 7009 GTTTGCCTGTGAACCGGAATGGGGTTGAACGTTTGCGAAATTGCAACTAAACAGTTCTTT 7068 ||| ||||| | || || ||||||||||| || || || ||||| | || ||||| || Sbjct 766 GTTCGCCTGCGCCCCTGAGTGGGGTTGAACATTGGCAAACTTGCACCCGAAGAGTTCCTT 707 Query 7069 AGCACGCTCAATTGCCAGGTTCTCGATCTCATCGGCTTTTACACAACCGCCGTAATACCG 7128 || || || ||| || | ||||| || ||| | | |||| |||||||| ||||| Sbjct 706 TGCCCGATCGCGTGCGAGTTGCTCGACCTTGTCGTGATGTTCACACCCGCCGTAGTACCG 647 Query 7129 TTTGCCTGGATATCCCTCAGCATACTTGTTGGT 7161 || ||||||||||| |||||||| ||||| Sbjct 646 CCGTCCGGGATATCCCTCGGCATACTTATTGGT 614 >seq64863 Length=2526 Score = 86.0 bits (94), Expect = 7e-12 Identities = 200/298 (67%), Gaps = 4/298 (1%) Strand=Plus/Plus Query 6926 CCATGTGTTAAATGACCACC--GCAATCCAAAGACATCGCCAATACTGAATCGCCTGGAC 6983 || |||||||| || ||||| || || | || ||| | || | | ||| || ||| Sbjct 646 CCGTGTGTTAAGTGGCCACCATGCGATAAATCGA-ATC-CTAAAATTTTATCTCCAGGAT 703 Query 6984 TCAGCAACGCATGGTAAACAGCTTGGTTTGCCTGTGAACCGGAATGGGGTTGAACGTTTG 7043 | || | ||| | ||||||| ||||| || | ||| || || |||||||| |||| Sbjct 704 TAAGACAAGCAAGAAGAACAGCTGCATTTGCTTGAGCACCTGAGTGAGGTTGAACATTTG 763 Query 7044 CGAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATCTCATCGG 7103 | | | | ||| | || | ||| |||||||| | ||| ||||| | ||| Sbjct 764 CCCATTCCGCTCCAAATAATTTACAAAGACGTTCAATTGCTAAGTTTTCGATTTTATCTA 823 Query 7104 CTTTTACACAACCGCCGTAATACCGTTTGCCTGGATATCCCTCAGCATACTTGTTGGTAA 7163 | | ||||||| || ||||| ||||| |||||| || |||||||||||||| |||| Sbjct 824 CAACTTCACAACCACCATAATAACGTTTTCCTGGAAGACCTTCAGCATACTTGTTTGTAA 883 Query 7164 AAATAGAACCTTGCGCTTTCATAACATCATCGGACACATAGTTTTCGGATGCAATCAA 7221 | | || |||| |||||| | ||| ||| | ||||| || ||||| || Sbjct 884 GTACACTTCCCATAGCTTCCATAACTTGATCACTCACGAAATTTTCCGAAGCAATTAA 941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552598604348160