Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq108602 147 2e-30 seq44811 122 8e-23 seq97248 118 1e-21 seq14831 98.7 9e-16 seq19544 95.1 1e-14 seq94139 93.3 4e-14 seq87644 93.3 4e-14 >seq108602 Length=371 Score = 147 bits (162), Expect = 2e-30 Identities = 172/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | ||||| || || | ||||||||| | |||||| | || | ||| ||| Sbjct 348 AATGCAGATCTTTGTTAAGACTCTTACTGGAAAAACCATCACCTTAGATGTTGAA-CAAT 290 Query 26828 C-GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATC 26886 | ||||||||||| | ||||| |||||| || ||||| || || || || || | Sbjct 289 CTGACACCATCGACAATGTCAAGACTAAGATTCAAGATAAAGAGGGAATTCCACCAGACC 230 Query 26887 AACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATA 26946 |||| ||||| || | | || |||||| | ||||| | ||||| | || |||| Sbjct 229 AACAGAGACTTATCTTTGCTGGAAAACAATTAGAAGACGGTAGAACTCTATCAGATTATA 170 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGA 26996 |||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 169 ACATTCAAAAAGAATCTACTCTCCATTTGGTCCTCAGACTTAGAGGAGGA 120 >seq44811 Length=222 Score = 122 bits (134), Expect = 8e-23 Identities = 114/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 26853 AAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAA 26912 |||||| ||||||||||| || || || |||||||||||||| || | | || || Sbjct 189 AAGATTCAGGACAAAGAAGGAATTCCACCAGATCAACAAAGACTTATCTTTGCTGGAAAG 130 Query 26913 CAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCAT 26972 ||| | ||||| | ||||| || |||||| |||||||| || ||||||||| |||| Sbjct 129 CAATTGGAAGACGGTAGAACTCTCTCCGACTACAACATTCAGAAGGAATCTACTCTCCAC 70 Query 26973 CTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||||| |||||||||||||||| Sbjct 69 TTGGTCCTCAGACTTAGAGGAGGAA 45 >seq97248 Length=461 Score = 118 bits (130), Expect = 1e-21 Identities = 173/238 (73%), Gaps = 5/238 (2%) Strand=Plus/Plus Query 26763 AACAAA-ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA 26821 |||||| |||||| | || ||||| || |||||||| || | || ||| | || | || Sbjct 176 AACAAATATGCAAATCTTCGTAAAGACTTTAACTGGTAAGACAATTACCTTAGATGTTGA 235 Query 26822 ATCAAAC-GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTC 26880 ||| | || || || || | ||||| |||||| ||||||||||| || || | Sbjct 236 G-CAATCAGATACTATTGACAACGTCAAGACTAAGATTCAAGACAAAGAAGGCATCCCAC 294 Query 26881 CCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC- 26939 | |||||||| ||| | || | || || || ||| | ||||||| || ||| | | | Sbjct 295 CAGATCAACAGAGATTGATCTTCGCTGGAAAGCAATTAGAAGATGGAAG-AACATTATCT 353 Query 26940 GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 || || |||||||| ||||| || ||| | ||| ||||||| ||||| |||||||||| Sbjct 354 GATTACAACATTCAGAAAGAGTCCACTCTTCATTTGGTCCTTAGACTCAGAGGAGGAA 411 >seq14831 Length=294 Score = 98.7 bits (108), Expect = 9e-16 Identities = 105/136 (77%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 ||||||||||| || ||||| || ||||| ||||| || | | || ||| || ||| Sbjct 30 GACAAAGAAGGCATCCCTCCAGACCAACAGAGACTGATCTTTGCAGGAAAATGCCTTGAA 89 Query 26922 GATGATAGAAACGTCAGC-GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||| || ||| | ||| ||||| || || |||||||| ||||||||||| || ||||| Sbjct 90 GATGGAAG-AACCTTAGCAGACTACAATATCCAAAAAGAGTCTACTATCCACCTTGTCCT 148 Query 26981 GAGACTTAGAGGAGGA 26996 ||| | ||||||||| Sbjct 149 TAGATTAAGAGGAGGA 164 >seq19544 Length=280 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | |||||||| || || |||||||| | || ||| | || | ||| | Sbjct 279 AATATGCAGATCTTTGTAAAGACCTTGACTGGAAAGACCATTACCCTTGACGTCGAACAA 220 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||| || || || | || || |||||| || || ||||| || || || ||| Sbjct 219 TCCGATACTATTGATAATGTAAAGACTAAGATTCAAGATAAGGAAGGTATCCCACCAGAT 160 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 ||||||||| | || | | || || ||| | ||||||| |||| | | || || Sbjct 159 CAACAAAGATTGATCTTTGCAGGAAAGCAATTAGAAGATGGAAGAACCTTATCTGATTAC 100 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 || || || || || || ||| | ||| |||| || |||||||||||||||| Sbjct 99 AATATCCAGAAGGAGTCCACTCTTCATTTGGTACTTAGACTTAGAGGAGGAA 48 >seq94139 Length=510 Score = 93.3 bits (102), Expect = 4e-14 Identities = 163/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 26762 AAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA 26821 || |||||||||||| ||||||||||| |||| || ||| | ||||| |||| | || Sbjct 349 AAGCAAAATGCAAGTATTTGTAAAAACTCTAACAGGTAAAACTATCACAGTCGATGTTGA 290 Query 26822 ATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCC 26881 | ||||| | || || | ||||| || ||| || || ||||| || || | Sbjct 289 ACACAACGAATCTATTGATAACATCAAAGCCAAAATTCAGGAAAAGGAAGGTATCCCAGC 230 Query 26882 CGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-G 26940 ||| |||||| | ||| || || || ||| | ||||||| || ||| | || | Sbjct 229 TGATAGCCAAAGATTAGTTTTTGGTGGAAAGCAATTGGAAGATGGAAG-AACAGCTGCAG 171 Query 26941 ACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 | || || ||| |||||| ||||| ||| |||| || ||| |||||||||| Sbjct 170 ATTACAATATTAGAAAAGAGTCTACCATCTTCTTGGTTCTCAGAATTAGAGGAGG 116 >seq87644 Length=678 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 || |||||||| || ||||| |||||||||||| | || | | ||| || ||| | ||| Sbjct 243 GATAAAGAAGGAATTCCTCCAGATCAACAAAGATTAATCTTTGCCGGAAAGCAATTAGAA 302 Query 26922 GATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 |||| |||| | | ||||| || ||||| ||||||||||| | ||||| ||||| Sbjct 303 GATGGAAGAACCTTATCTGACTACAATATTCAGAAAGAATCTACCCTTCATCTCGTCCTC 362 Query 26982 AGACTTAGAGGAGG 26995 ||| | ||||| || Sbjct 363 AGATTAAGAGGTGG 376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478009313021440