Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq97248 134 1e-26 seq108602 114 1e-20 seq14831 86.0 5e-12 seq94139 84.2 2e-11 seq87644 84.2 2e-11 seq44811 84.2 2e-11 >seq97248 Length=461 Score = 134 bits (148), Expect = 1e-26 Identities = 176/237 (74%), Gaps = 5/237 (2%) Strand=Plus/Plus Query 23985 AACAAA-ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGA 24043 |||||| |||||| | || ||||| || |||||||| || | |||||| | || || || Sbjct 176 AACAAATATGCAAATCTTCGTAAAGACTTTAACTGGTAAGACAATTACCTTAGATGTTGA 235 Query 24044 GGCCAAC-GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTC 24102 | | | | || || || || | ||||| |||||| |||||||||||||| || | Sbjct 236 G-CAATCAGATACTATTGACAACGTCAAGACTAAGATTCAAGACAAAGAAGGCATCCCAC 294 Query 24103 CCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC- 24161 | |||||||||||| |||| | || || |||||| | ||||||| || ||| | | | Sbjct 295 CAGATCAACAGAGATTGATCTTCGCTGGAAAGCAATTAGAAGATGGAAG-AACATTATCT 353 Query 24162 GATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||||| |||||||| ||||| || || ||||||| || | ||| | ||||||||| Sbjct 354 GATTACAACATTCAGAAAGAGTCCACTCTTCATTTGGTCCTTAGACTCAGAGGAGGA 410 >seq108602 Length=371 Score = 114 bits (126), Expect = 1e-20 Identities = 169/237 (71%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| || || | ||||||||| | || ||| | || || || | | Sbjct 348 AATGCAGATCTTTGTTAAGACTCTTACTGGAAAAACCATCACCTTAGATGTTGAA-CAAT 290 Query 24050 C-GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATC 24108 | ||||||||||| | ||||| |||||| || ||||| || || || || || | Sbjct 289 CTGACACCATCGACAATGTCAAGACTAAGATTCAAGATAAAGAGGGAATTCCACCAGACC 230 Query 24109 AACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATA 24168 |||||||||| || | | || || ||| | ||||| | |||| | ||||||| Sbjct 229 AACAGAGACTTATCTTTGCTGGAAAACAATTAGAAGACGGTAGAACTCTATCAGATTATA 170 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGACTATAAT 24225 ||||||||||||||||||| | ||||| || | ||| | ||||||||| | |||| Sbjct 169 ACATTCAAAAAGAATCTACTCTCCATTTGGTCCTCAGACTTAGAGGAGGATTCTAAT 113 >seq14831 Length=294 Score = 86.0 bits (94), Expect = 5e-12 Identities = 102/136 (75%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 |||||||||||||| ||||| || |||||||||||||| | | || || || ||| Sbjct 30 GACAAAGAAGGCATCCCTCCAGACCAACAGAGACTGATCTTTGCAGGAAAATGCCTTGAA 89 Query 24144 GATGACAGAAACGTCAGC-GATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||| || ||| | ||| || || || || |||||||| ||||| || || | || | Sbjct 90 GATGGAAG-AACCTTAGCAGACTACAATATCCAAAAAGAGTCTACTATCCACCTTGTCCT 148 Query 24203 AAGATTGAGAGGAGGA 24218 ||||| ||||||||| Sbjct 149 TAGATTAAGAGGAGGA 164 >seq94139 Length=510 Score = 84.2 bits (92), Expect = 2e-11 Identities = 161/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 23984 AAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGA 24043 || |||||||||||| ||||||||||| |||| || ||| | || || |||| || || Sbjct 349 AAGCAAAATGCAAGTATTTGTAAAAACTCTAACAGGTAAAACTATCACAGTCGATGTTGA 290 Query 24044 GGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCC 24103 |||||| | || || | ||||| || ||| || || ||||| || || | Sbjct 289 ACACAACGAATCTATTGATAACATCAAAGCCAAAATTCAGGAAAAGGAAGGTATCCCAGC 230 Query 24104 CGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-G 24162 ||| || ||| | ||| || || |||||| | ||||||| || ||| | || | Sbjct 229 TGATAGCCAAAGATTAGTTTTTGGTGGAAAGCAATTGGAAGATGGAAG-AACAGCTGCAG 171 Query 24163 ATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||| || ||| |||||| ||||| || || || | ||| | |||||||| Sbjct 170 ATTACAATATTAGAAAAGAGTCTACCATCTTCTTGGTTCTCAGAATTAGAGGAGG 116 >seq87644 Length=678 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 || |||||||| || ||||| |||||||| ||| | || | | ||| |||||| | ||| Sbjct 243 GATAAAGAAGGAATTCCTCCAGATCAACAAAGATTAATCTTTGCCGGAAAGCAATTAGAA 302 Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 |||| |||| | | || || || ||||| ||||||||||| ||||| | || | Sbjct 303 GATGGAAGAACCTTATCTGACTACAATATTCAGAAAGAATCTACCCTTCATCTCGTCCTC 362 Query 24204 AGATTGAGAGGAGG 24217 ||||| ||||| || Sbjct 363 AGATTAAGAGGTGG 376 >seq44811 Length=222 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 24075 AAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAG 24134 |||||| ||||||||||| || || || |||||||| ||||| || | | || ||| Sbjct 189 AAGATTCAGGACAAAGAAGGAATTCCACCAGATCAACAAAGACTTATCTTTGCTGGAAAG 130 Query 24135 CAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCAT 24194 ||| | ||||| | |||| || ||| || |||||||| || |||||||| | || Sbjct 129 CAATTGGAAGACGGTAGAACTCTCTCCGACTACAACATTCAGAAGGAATCTACTCTCCAC 70 Query 24195 TTAGTGTTAAGATTGAGAGGAGGA 24218 || || | ||| | ||||||||| Sbjct 69 TTGGTCCTCAGACTTAGAGGAGGA 46 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429364060438560